Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,059,024 – 13,059,120 |
Length | 96 |
Max. P | 0.726367 |
Location | 13,059,024 – 13,059,120 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -18.33 |
Energy contribution | -18.69 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -3.23 |
Structure conservation index | 0.75 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13059024 96 + 22407834 UUCUUGUUUGCACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCGUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAACGACGUGUGCAUAAUAU ....(((((((((........(((((....(((((....)))))(((....)))...)))))....(((((.......)))))..))))).)))). ( -29.40) >DroSec_CAF1 40646 96 + 1 UUCUUGUUUACACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCGUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU ...((((.(((((........(((((....(((((....)))))(((....)))...)))))....(((((.......)))))))))).))))... ( -26.70) >DroSim_CAF1 36310 96 + 1 UUCUUGUUUACACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCGUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU ...((((.(((((........(((((....(((((....)))))(((....)))...)))))....(((((.......)))))))))).))))... ( -26.70) >DroEre_CAF1 40183 96 + 1 UUCUUGUUUACACUUUUCCCAGGGCCUUUUGCUUGUCCACAAGCAGAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU ...((((.(((((.........((((.((((((((....))))))))..........)))).....(((((.......)))))))))).))))... ( -25.50) >DroYak_CAF1 40070 95 + 1 UUCUUGUUUACACUU-UCCCAUGGCCUUUUGCUUGCUCACAAGCAGAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU ...((((.(((((..-.....(((((.((((((((....))))))))..........)))))....(((((.......)))))))))).))))... ( -25.70) >DroAna_CAF1 28613 92 + 1 UUUUUCCCUCCACUUUCUUGA--GUCUCUUCGUUG--AACAAACAAGUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGUAUAAUGC ..................(((--(...(((.(((.--....))))))..))))(((((....((.((((((.......)))))).))...))))). ( -12.50) >consensus UUCUUGUUUACACUUUUCUCAUGGCCUUUUGCUUGUUCACAAGCAUAUUCUUACAUUGGCCAACCUGUCGUAUGCUUAAUGACGUGUGCAUAAUAU ...((((.(((((.........((((...((((((....))))))............)))).....(((((.......)))))))))).))))... (-18.33 = -18.69 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:56 2006