Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,058,181 – 13,058,272 |
Length | 91 |
Max. P | 0.652594 |
Location | 13,058,181 – 13,058,272 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -29.93 |
Consensus MFE | -17.49 |
Energy contribution | -18.22 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.19 |
Mean z-score | -1.56 |
Structure conservation index | 0.58 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13058181 91 - 22407834 CAGUCAGGGCCAUGAAUAUGGCCACCGGGCAGCUGGUCAGUCUCAGUUCUCAA---------------UUCUCGGAUGGCAAAUCCCACUUCUGCCACCGGAAUCA .......((((((....))))))...(((.((((((......))))))))).(---------------(((.(((.(((((...........)))))))))))).. ( -30.10) >DroVir_CAF1 45372 69 - 1 CAGUCAGGGCCAUGGAUAUGGCCA-------GCUGGUCAGUCAACGC--U-GA-------------------AAUCUCGUUCUUCAGACUUCAGUCA--------A ((((...((((((....)))))).-------))))..........((--(-((-------------------(.(((........))).))))))..--------. ( -20.70) >DroSec_CAF1 39805 90 - 1 CAGUCAGGGCCAUGAAUAUGGCCACCG-GCAGCUGGUCAGUCUCAGUUCGCGA---------------UUCUCGGAUGGCAAAUCCCACUUCUGCCACCGGAAUCA .......((((((....))))))....-((((((((......)))))).))((---------------(((.(((.(((((...........))))))))))))). ( -33.80) >DroSim_CAF1 35452 91 - 1 CAGUCAGGGCCAUGAAUAUGGCCACCGGGCAGCUGGUCAGUCUCAGUUCGCGA---------------UUCUCGGAUGGCAAAUCCCACUUCUGCCACAGGAAUCA .......((((((....)))))).....((((((((......)))))).))((---------------((((..(.(((((...........)))))).)))))). ( -28.30) >DroEre_CAF1 39258 104 - 1 CAGUCAGGGCCAUGAAUAUGGCCACCG-GCAGCUGGUCAGUCUCAGUUCUCGA-UUCCCGAGUCUCGAUUCUCGGAUGGCAAAUGCCACUUCUGCCACCGGAAUCA ..(((.(((((((....)))))).).)-))((((((......))))))((((.-....))))....(((((.(((.(((((...........))))))))))))). ( -37.10) >DroYak_CAF1 39248 99 - 1 CAGUCAGGGCCAUGAAUAUGGCCACCG-GCAGCUGGUCAGUCUCAGUUCUCUAGUUCUCGAG------CUCUCGGAUGGCAAAUCGCAUUUCUGCCACCGGAAUCA ..(((.(((((((....)))))).).)-))..(((((..((((.((..(((........)))------..)).))))((((...........)))))))))..... ( -29.60) >consensus CAGUCAGGGCCAUGAAUAUGGCCACCG_GCAGCUGGUCAGUCUCAGUUCUCGA_______________UUCUCGGAUGGCAAAUCCCACUUCUGCCACCGGAAUCA .......((((((....)))))).......((((((......)))))).......................((((.(((((...........)))))))))..... (-17.49 = -18.22 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:54 2006