| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,051,330 – 13,051,427 |
| Length | 97 |
| Max. P | 0.581114 |
| Location | 13,051,330 – 13,051,427 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.92 |
| Mean single sequence MFE | -35.18 |
| Consensus MFE | -20.93 |
| Energy contribution | -22.17 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13051330 97 - 22407834 CAUUGAUAUAUGGGCUUGAGGUUGGCCCAAAAGCAGAGGGGGUGUUU-CUG--------GCGCGGGCCAAAGUCGUUUUAGGCUUAGGUC-GGUGCUGAUAUAUGUA .....(((((((((((.......))))).....((((((.....)))-)))--------((((.((((.(((((......))))).))))-.))))..))))))... ( -34.60) >DroSec_CAF1 32977 97 - 1 CGUUGAUAUAUGGGCUUGAGGUUGGCCCAAAAGCAGAGGGGGUGGCU-CCG--------GCGCGGGCCAAAGUCGUUUUAGGCUUAGGUC-GGUGCUGAUAUAUGUA .....(((((((((((.......))))).........((((....))-))(--------((((.((((.(((((......))))).))))-.))))).))))))... ( -36.70) >DroSim_CAF1 28565 97 - 1 CGUUGAUAUAUGGGCUUGAGGUUGGCCCAAAAGCUGAGGGGGCGGCU-CCG--------GCGCGGGCCAAAGUCGUUUUAGGCUUAGGUC-GGUGCUGAUAUAUGUA .....(((((((((((.......)))))...(((((......)))))-.((--------((((.((((.(((((......))))).))))-.))))))))))))... ( -39.20) >DroEre_CAF1 32417 106 - 1 CGUUGAUAUAUGGGCUUGAGGUUGGCCCAAAAGCAGAGGGGGUGGCUCGCGGGAGGCGCGAGCGGCCCAAAGUCGUUUUAGGCUUAGGUC-GGUGCUGAUAUAUGUA .....(((((((((((.......)))))...((((..((((((.(((((((.....))))))).)))).(((((......)))))...))-..)))).))))))... ( -44.40) >DroYak_CAF1 32317 97 - 1 CGUUGAUAUAUGGGCUUGAGGUUGGCCCAAAAGCAGAGGGGGUGGCU-GCG--------AAGCGGGCCAAAGUCGUUUUAGGCUUAGGUC-GGUGCUGAUAUAUGUA .....((((((.((((((.(((((.(((..........))).)))))-.))--------).((.((((.(((((......))))).))))-.))))).))))))... ( -32.70) >DroAna_CAF1 21986 77 - 1 CGUUGAUAUAUGAGCUGGGG------C------CACCGGGGGUG-CU-GAG------------AGGCCAAAGUCGUUUUAGGCUUAUGCCAGGCGCUGAUAU----A ......(((((.((((((((------(------(.((((.....-))-).)------------.)))).(((((......)))))...)))...))).))))----) ( -23.50) >consensus CGUUGAUAUAUGGGCUUGAGGUUGGCCCAAAAGCAGAGGGGGUGGCU_CCG________GCGCGGGCCAAAGUCGUUUUAGGCUUAGGUC_GGUGCUGAUAUAUGUA .....((((((.(((....(((((.(((..........))).))))).................((((.(((((......))))).))))....))).))))))... (-20.93 = -22.17 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:53 2006