Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,046,653 – 13,046,748 |
Length | 95 |
Max. P | 0.997248 |
Location | 13,046,653 – 13,046,748 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 73.88 |
Mean single sequence MFE | -23.85 |
Consensus MFE | -12.44 |
Energy contribution | -14.25 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.10 |
Mean z-score | -2.86 |
Structure conservation index | 0.52 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13046653 95 + 22407834 AUG------CUAUAUAUAUGAUAUAUGCUUCUGCAAAUAUAUUAUUCAGCUUGUUUAUUGAGAA----UCAGA--------UAAGCUAUUUUGUAGCAGUGUAAGCAUAAAAA .((------(((((...(((((((((((....)))..))))))))..(((((((((..(....)----..)))--------))))))....)))))))(((....)))..... ( -21.70) >DroSec_CAF1 28306 101 + 1 AUGCUAUAUAUAUAUAUAUGAUGUAUGCUUAUGCAAAUAUUAUAUUCAGUUUGUUUACUGAGAA----GCAGA--------UAAGCUAUUUUGUAGCAGUGUAUGCACAGCAA .(((((((.......(((((((((.(((....))).)))))))))..(((((((((.((....)----).)))--------))))))....)))))))(((....)))..... ( -27.40) >DroSim_CAF1 23903 95 + 1 AUG------AUAUAUAUAUGAUAUAUGCUUAUGCUAAUAUAUUAUUCAGUUUGUUUACUGAGAA----GCAGU--------UAAGCUAUUUUGUAGCAGUGUAUGCACAGCAA ...------.........((((((((((....))..))))))))((((((......))))))..----((...--------...(((((...))))).(((....))).)).. ( -19.80) >DroEre_CAF1 27763 95 + 1 -------------AUAUUUGAUAUAUGCUU--GCAAAUAUUUUAUGUAGUUUGUUUAUACGAAAUCCCGCAAUUAGGGAUA---GCUAUUUUGUAGCAGUGUAAGCACGCCAA -------------((((..(((((.((...--.)).)))))..)))).((.(((((((((...(((((.......))))).---(((((...))))).))))))))).))... ( -26.50) >consensus AUG______AUAUAUAUAUGAUAUAUGCUUAUGCAAAUAUAUUAUUCAGUUUGUUUACUGAGAA____GCAGA________UAAGCUAUUUUGUAGCAGUGUAAGCACAGCAA .........................(((((((((..........((((((......))))))......................(((((...))))).)))))))))...... (-12.44 = -14.25 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:51 2006