Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,030,633 – 13,030,732 |
Length | 99 |
Max. P | 0.872812 |
Location | 13,030,633 – 13,030,732 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.41 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -15.46 |
Energy contribution | -15.80 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.33 |
Mean z-score | -2.00 |
Structure conservation index | 0.45 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13030633 99 + 22407834 UCUCCUCCUGCAGGAGCAGCUCUCGCUUCACUUGCUCCAGCGUGGGCACAUCCGGAACGGUAACUGUCAGGGAUUG---------------GCCACCCAUUACACCCACGCUCU ............((((((((....))......))))))((((((((...((((.((.(((...)))))..))))((---------------(....))).....)))))))).. ( -29.80) >DroVir_CAF1 12257 99 + 1 UCUGCUUCUGCAGCUGCAGCUCACGCGCCACCUGCUCCAGCGUGGGCAUGUCCGGCACAGACAUGGUCAGCGACUG---------------GCCGCCCAUAACGCCGACGCUCU ...((.((.((.((((.(((.............))).))))(((((((((((.......)))))((((((...)))---------------)))))))))...)).)).))... ( -37.72) >DroPse_CAF1 11657 114 + 1 UCUCCUCCUGCAGCUGCAGCUCUCGCUUCACCUGCUCCAAGGUGGGCACAUCCGGCACGGUCACCGUCAGGCCCUGUCCCACCACAUGGCUGCCCCCCAUCACGCCCACGCUCU .........((((.((.(((....))).)).))))......((((((......(((((((...))))..((((.(((......))).))))))).........))))))..... ( -34.66) >DroGri_CAF1 12714 99 + 1 UCUGCUCCUGCAGCUGCAGCUCACGCUUCACCUGCUCCAGCGUGGGCAUAUCCGGCACAGACAUGGCCAACGAUUG---------------GCCACCCAUCACGCCGACACUCU .((((....)))).....(((((((((...........))))))))).....((((.......((((((.....))---------------))))........))))....... ( -34.36) >DroAna_CAF1 4017 99 + 1 UCUCCUCCUGCCGCUGCAGCUCCCGCUUCACCUGCUCCAGUGUGGGUACAUCCGGCACCGUUACCGUGGGCGACUG---------------CCCGCCCAUCACACCCACACUCU .........((.(.((.(((....))).)).).))...(((((((((.....(((........)))((((((....---------------..))))))....))))))))).. ( -33.70) >DroPer_CAF1 11690 114 + 1 UCUCCUCCUGCAGCUGCAGCUCUCGCUUCACCUGCUCCAAGGUGGGCACAUCCGGCACGGUCACCGUCAGGCCCUGUCCCACCACAUGGCUGCCCCCCAUCACGCCCACGCUCU .........((((.((.(((....))).)).))))......((((((......(((((((...))))..((((.(((......))).))))))).........))))))..... ( -34.66) >consensus UCUCCUCCUGCAGCUGCAGCUCUCGCUUCACCUGCUCCAGCGUGGGCACAUCCGGCACGGUCACCGUCAGCGACUG_______________GCCACCCAUCACGCCCACGCUCU .........((((.((.(((....))).)).))))......((((((.....(((........))).(((...)))...........................))))))..... (-15.46 = -15.80 + 0.34)
Location | 13,030,633 – 13,030,732 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.41 |
Mean single sequence MFE | -42.83 |
Consensus MFE | -28.22 |
Energy contribution | -28.62 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.29 |
Mean z-score | -1.66 |
Structure conservation index | 0.66 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13030633 99 - 22407834 AGAGCGUGGGUGUAAUGGGUGGC---------------CAAUCCCUGACAGUUACCGUUCCGGAUGUGCCCACGCUGGAGCAAGUGAAGCGAGAGCUGCUCCUGCAGGAGGAGA ..((((((((..((..(((....---------------....))).........(((...))).))..))))))))((((((......((....))))))))............ ( -36.80) >DroVir_CAF1 12257 99 - 1 AGAGCGUCGGCGUUAUGGGCGGC---------------CAGUCGCUGACCAUGUCUGUGCCGGACAUGCCCACGCUGGAGCAGGUGGCGCGUGAGCUGCAGCUGCAGAAGCAGA ...((.(((((((...((((((.---------------(((...))).))(((((((...)))))))))))))))))).((((.((..((....))..)).))))....))... ( -42.90) >DroPse_CAF1 11657 114 - 1 AGAGCGUGGGCGUGAUGGGGGGCAGCCAUGUGGUGGGACAGGGCCUGACGGUGACCGUGCCGGAUGUGCCCACCUUGGAGCAGGUGAAGCGAGAGCUGCAGCUGCAGGAGGAGA ...((((((((.(......).))..))))))(((((((((.(((...((((...)))))))...))).)))))).....((((.((.(((....))).)).))))......... ( -44.50) >DroGri_CAF1 12714 99 - 1 AGAGUGUCGGCGUGAUGGGUGGC---------------CAAUCGUUGGCCAUGUCUGUGCCGGAUAUGCCCACGCUGGAGCAGGUGAAGCGUGAGCUGCAGCUGCAGGAGCAGA ...((.(((((((...(((((((---------------((.....)))))(((((((...)))))))))))))))))).((((.((.(((....))).)).))))....))... ( -44.30) >DroAna_CAF1 4017 99 - 1 AGAGUGUGGGUGUGAUGGGCGGG---------------CAGUCGCCCACGGUAACGGUGCCGGAUGUACCCACACUGGAGCAGGUGAAGCGGGAGCUGCAGCGGCAGGAGGAGA ..((((((((((...(((((((.---------------...)))))))(((((....)))))....))))))))))...((.(.((.(((....))).)).).))......... ( -44.00) >DroPer_CAF1 11690 114 - 1 AGAGCGUGGGCGUGAUGGGGGGCAGCCAUGUGGUGGGACAGGGCCUGACGGUGACCGUGCCGGAUGUGCCCACCUUGGAGCAGGUGAAGCGAGAGCUGCAGCUGCAGGAGGAGA ...((((((((.(......).))..))))))(((((((((.(((...((((...)))))))...))).)))))).....((((.((.(((....))).)).))))......... ( -44.50) >consensus AGAGCGUGGGCGUGAUGGGCGGC_______________CAGUCCCUGACGGUGACCGUGCCGGAUGUGCCCACGCUGGAGCAGGUGAAGCGAGAGCUGCAGCUGCAGGAGGAGA ..((((((((((((.(.((........................................)).).))))))))))))...((((.((.(((....))).)).))))......... (-28.22 = -28.62 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:49 2006