Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,339,575 – 1,339,675 |
Length | 100 |
Max. P | 0.704640 |
Location | 1,339,575 – 1,339,675 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -23.15 |
Energy contribution | -24.85 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.18 |
Mean z-score | -1.44 |
Structure conservation index | 0.67 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1339575 100 + 22407834 A---CUAUGUGUGUACUGGUAGACUUCCUGCACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGUUUCCGGUUUGCCUU---------------- .---....(((((((..((.......)))))))))...(((.((((..((((((....)))((...-((((.......))))...)))))...)))).)))...---------------- ( -28.40) >DroPse_CAF1 139272 120 + 1 GUGCGAGUGUGUGUGUGUGCCUGCUUCCUGUACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAAAGGAGCCCUGCUCUCACAUCCGGCUUCCGAUUCGCCUUUCACCAUCGCCCAUCG (.(((((((((.((((((((.........)))))))))))))((((...(((((....)))))....(((((...)))))......))))....................)))).).... ( -38.50) >DroSim_CAF1 100891 100 + 1 A---CUGUGUGUGUACGGGUAUACUUCCUGCACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUUUCACUUCCGGUUUCCGGUUUGCCUU---------------- .---..(((((((((.(((......)))))))))))).(((.((((..((((((....)))(((..-...)))..............)))...)))).)))...---------------- ( -34.50) >DroEre_CAF1 110105 97 + 1 A---CUGU--GUGUAUGGGUGUACUUCC-GCACACGCCGCACGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGUUUCCGGUUUGCCUU---------------- .---..((--((((.((((......)))-).)))))).(((.((((..((((((....)))((...-((((.......))))...)))))...)))).)))...---------------- ( -30.40) >DroYak_CAF1 100826 104 + 1 A---CUGU--GUGUAUGGGUAUACUUCCUGCACAUGCCGCACGCCGCCGCCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGCUUCCGGUUUGCCCCAGCAAG---------- .---..((--(((((.(((......))))))))))((((...((((..((((((....))))))..-((((.......))))....))))...))))((((....)))).---------- ( -36.60) >DroAna_CAF1 123478 106 + 1 A---GUGUGUGUGUGUGUAUAUACUUCCUGCACACACCGCAUGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGUUUCCGGGACGGCUCUCGCCA---------- .---(((((.(((((((((.........))))))))))))))(((((............)))))..-.(((((.((....)).((((((...)))))).)))))......---------- ( -39.20) >consensus A___CUGUGUGUGUAUGGGUAUACUUCCUGCACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAC_UGAGCCCUGUUCUCACUUCCGGUUUCCGGUUUGCCUU________________ ......(((((((((.(((......)))))))))))).(((.((((..((((((....)))(((......)))..............)))...)))).)))................... (-23.15 = -24.85 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:37 2006