Locus 455

Sequence ID 2L_DroMel_CAF1
Location 1,339,575 – 1,339,675
Length 100
Max. P 0.704640
window735

overview

Window 5

Location 1,339,575 – 1,339,675
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.21
Mean single sequence MFE -34.60
Consensus MFE -23.15
Energy contribution -24.85
Covariance contribution 1.70
Combinations/Pair 1.18
Mean z-score -1.44
Structure conservation index 0.67
SVM decision value 0.36
SVM RNA-class probability 0.704640
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1339575 100 + 22407834
A---CUAUGUGUGUACUGGUAGACUUCCUGCACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGUUUCCGGUUUGCCUU----------------
.---....(((((((..((.......)))))))))...(((.((((..((((((....)))((...-((((.......))))...)))))...)))).)))...---------------- ( -28.40)
>DroPse_CAF1 139272 120 + 1
GUGCGAGUGUGUGUGUGUGCCUGCUUCCUGUACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAAAGGAGCCCUGCUCUCACAUCCGGCUUCCGAUUCGCCUUUCACCAUCGCCCAUCG
(.(((((((((.((((((((.........)))))))))))))((((...(((((....)))))....(((((...)))))......))))....................)))).).... ( -38.50)
>DroSim_CAF1 100891 100 + 1
A---CUGUGUGUGUACGGGUAUACUUCCUGCACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUUUCACUUCCGGUUUCCGGUUUGCCUU----------------
.---..(((((((((.(((......)))))))))))).(((.((((..((((((....)))(((..-...)))..............)))...)))).)))...---------------- ( -34.50)
>DroEre_CAF1 110105 97 + 1
A---CUGU--GUGUAUGGGUGUACUUCC-GCACACGCCGCACGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGUUUCCGGUUUGCCUU----------------
.---..((--((((.((((......)))-).)))))).(((.((((..((((((....)))((...-((((.......))))...)))))...)))).)))...---------------- ( -30.40)
>DroYak_CAF1 100826 104 + 1
A---CUGU--GUGUAUGGGUAUACUUCCUGCACAUGCCGCACGCCGCCGCCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGCUUCCGGUUUGCCCCAGCAAG----------
.---..((--(((((.(((......))))))))))((((...((((..((((((....))))))..-((((.......))))....))))...))))((((....)))).---------- ( -36.60)
>DroAna_CAF1 123478 106 + 1
A---GUGUGUGUGUGUGUAUAUACUUCCUGCACACACCGCAUGCCGCCACCGCAAACUUGCGGCAC-UGAGCCCUGUUCUCACUUCCGGUUUCCGGGACGGCUCUCGCCA----------
.---(((((.(((((((((.........))))))))))))))(((((............)))))..-.(((((.((....)).((((((...)))))).)))))......---------- ( -39.20)
>consensus
A___CUGUGUGUGUAUGGGUAUACUUCCUGCACACGCCGCAUGCCGCCACCGCAAACUUGCGGCAC_UGAGCCCUGUUCUCACUUCCGGUUUCCGGUUUGCCUU________________
......(((((((((.(((......)))))))))))).(((.((((..((((((....)))(((......)))..............)))...)))).)))................... (-23.15 = -24.85 +   1.70) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:37 2006