Locus 4548

Sequence ID 2L_DroMel_CAF1
Location 13,027,293 – 13,027,383
Length 90
Max. P 0.924559
window7168

overview

Window 8

Location 13,027,293 – 13,027,383
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 86.06
Mean single sequence MFE -29.27
Consensus MFE -25.56
Energy contribution -25.08
Covariance contribution -0.47
Combinations/Pair 1.10
Mean z-score -2.19
Structure conservation index 0.87
SVM decision value 1.16
SVM RNA-class probability 0.924559
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13027293 90 + 22407834
GGUUGAGUUCG-UGGUGGUGGUGUUCGGCGACGUCAGACUGUCGGCACUUGCCUCGUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAAAU
....((((...-((((((..(.....(((((.((((((.((..(((....))).)).)))))))))))..)..).))))).))))...... ( -32.10)
>DroVir_CAF1 8629 76 + 1
---------------UGGUGAUUGUGGGCGACGUCAGACUGUCGGCACUUGCCUCGUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAAAU
---------------.(((((..(..(((((.((((((.((..(((....))).)).)))))))))))..)...)))))............ ( -27.40)
>DroGri_CAF1 9021 78 + 1
-------------UGGGGUGAUUGUGGGCGACGUCAGACUGUCGGCACUUGCCUCAUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAAAU
-------------...(((((..(..(((((.((((((.((..(((....))).)).)))))))))))..)...)))))............ ( -28.10)
>DroSim_CAF1 4705 90 + 1
GGUUGAGUUCG-UGGUGGUGGUGUUCGGCGACGUCAGACUGUCGGCACUUGCCUCGUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAAAU
....((((...-((((((..(.....(((((.((((((.((..(((....))).)).)))))))))))..)..).))))).))))...... ( -32.10)
>DroYak_CAF1 7563 84 + 1
GGUU-------GUGGUGGUGGUGUUCGGCGACGUCAGACUGUCGGCACUUGCCUCGUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAAAU
(((.-------..(((((..(.....(((((.((((((.((..(((....))).)).)))))))))))..)..).))))..)))....... ( -27.80)
>DroMoj_CAF1 8808 78 + 1
-------------ACUGGUGAUUGUGGGCGACGUCAGACUGUCGGCACUUGCCUCAUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAUAU
-------------...(((((..(..(((((.((((((.((..(((....))).)).)))))))))))..)...)))))............ ( -28.10)
>consensus
_____________GGUGGUGAUGGUCGGCGACGUCAGACUGUCGGCACUUGCCUCGUUUUGACUCGCUUUCUGCUCACCGUGCUCUAAAAU
................(((((.....(((((.((((((.((..(((....))).)).)))))))))))......)))))............ (-25.56 = -25.08 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:46 2006