Locus 4547

Sequence ID 2L_DroMel_CAF1
Location 13,026,872 – 13,026,962
Length 90
Max. P 0.543062
window7167

overview

Window 7

Location 13,026,872 – 13,026,962
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 82.23
Mean single sequence MFE -21.63
Consensus MFE -14.47
Energy contribution -15.00
Covariance contribution 0.53
Combinations/Pair 1.25
Mean z-score -1.56
Structure conservation index 0.67
SVM decision value 0.02
SVM RNA-class probability 0.543062
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13026872 90 - 22407834
AUGCUCCACCCU--CACACAUGGCCGGUGAUGGUUGCCACCU---GGCGUCGGGUCUAACCCAUGCCCACAUCAUAAA---CACUAACACGAAAGCCA
............--......((((.((((........)))).---(((((.(((.....))))))))...........---.............)))) ( -21.50)
>DroVir_CAF1 8093 89 - 1
AUGCCCAUAACCAA--CUCAUCGCUGGUGAUGGUUACUAUACAAUGGCAUCGGGUUUAAACCAUGC------CAUAACUGCUACUAAUCUAAAAUCC-
..((...((((((.--.((((.....)))))))))).......(((((((.((.......))))))------)))....))................- ( -20.80)
>DroSec_CAF1 8969 90 - 1
AUGCUCCACCCU--CACACAUGGCCGGUGAUGGUUGCCACCU---GGCGUCGGGUCUAACCCAUGUCCACACCAUAAG---CACUAACACGAAAGCCA
.((((....((.--.......))..((((.(((..(((....---)))...(((.....)))....)))))))...))---))......(....)... ( -23.10)
>DroSim_CAF1 4284 90 - 1
AUGCUCCACCCU--CACACAUGGCCGGUGAUGGUUGCCACCU---GGCGUCGGGUCUAACCCAUGUCCACACCAUAAG---CACUAACACGAAAGCCA
.((((....((.--.......))..((((.(((..(((....---)))...(((.....)))....)))))))...))---))......(....)... ( -23.10)
>DroEre_CAF1 8469 90 - 1
AUCCUCCACCUU--CACACAUCGCCGGUGAUGGUUGCCACCU---GGCGUCGGGUCUAACCCAUGCCCACACCAUAAA---CACUAACACGAAAGCCA
............--...........((((..(((....))).---(((((.(((.....))))))))..)))).....---........(....)... ( -19.80)
>DroYak_CAF1 7121 90 - 1
AUGCUCCACCUU--CACACAUGGCCGGUGAUGGUUGCCACCU---GGCGUCGGGUCUAACCCAUGCCCACACCACAAA---CACUAACACAAAAGCCA
............--......((((.((((........)))).---(((((.(((.....))))))))...........---.............)))) ( -21.50)
>consensus
AUGCUCCACCCU__CACACAUGGCCGGUGAUGGUUGCCACCU___GGCGUCGGGUCUAACCCAUGCCCACACCAUAAA___CACUAACACGAAAGCCA
....................((((.((((........))))....(((((.(((.....))))))))...........................)))) (-14.47 = -15.00 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:44 2006