Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,026,730 – 13,026,823 |
Length | 93 |
Max. P | 0.806769 |
Location | 13,026,730 – 13,026,823 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 80.11 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -26.28 |
Energy contribution | -27.16 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.36 |
Mean z-score | -1.80 |
Structure conservation index | 0.71 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13026730 93 + 22407834 GAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGUGGAGGACGCCGAGGCGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCAUCGAA ........((((((((((..(....(((.((...(((((.....)))))...))..))).).))))))))))((((..........))))... ( -41.10) >DroSim_CAF1 4136 93 + 1 GAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGUGGAGGACGCCGAGGCGGACGCUGAGCCGGCGGCCGAUGAAGUGGAGGCCACCGAA ........((((((((((..(((((....((...(((((.....)))))...))..))))).))))))))))......((((...)))).... ( -44.30) >DroEre_CAF1 8318 93 + 1 GAGGAUGACGCUGCCGUCGGCGGUGGCGACGAUGUGGAGGAGGACGCCGAGGCGGACGCGGAGCCGGCGGCCGAUGAAGUGGAGGCCACUGAA ..((....((((..(((((((.(((((..((..........(..(((....)))..).))..))).)).))))))).))))....))...... ( -38.60) >DroYak_CAF1 6976 81 + 1 GAGGAUGAGGCUGCCGGCGGCGGUGGCGGU------------GGCGACGAUGUGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCACUGAU ........((((((((((.(((.(.(((.(------------(....)).))).).)))...)))))))))).....(((((...)))))... ( -38.90) >DroAna_CAF1 198 89 + 1 GCGGAUUA-GCUGGCGGUGGUGGUGGCGACGAUGCAGAACAGGAU---GAUGCGGAUGCAGAACCGGCAGCCGAUGAAUUGGACGCUAUCGAU (((.....-((((.((((.((..(.(((.(.((.(......).))---).))).)..))...)))).))))(((....)))..)))....... ( -22.50) >consensus GAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGAGGAGGACGCCGAGGCGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCACCGAA ........((((((((((.(((.(.((..((.(((........))).))..)).).)))...))))))))))......((((...)))).... (-26.28 = -27.16 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:43 2006