Locus 4542

Sequence ID 2L_DroMel_CAF1
Location 13,020,683 – 13,020,780
Length 97
Max. P 0.530466
window7158

overview

Window 8

Location 13,020,683 – 13,020,780
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 83.16
Mean single sequence MFE -18.31
Consensus MFE -15.69
Energy contribution -14.50
Covariance contribution -1.19
Combinations/Pair 1.40
Mean z-score -1.38
Structure conservation index 0.86
SVM decision value -0.01
SVM RNA-class probability 0.530466
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13020683 97 - 22407834
CACAUCCACAUCAACACCCACGUCCGCCUCUAGUAGCAUCAGCGGCAGCAUGCUGGAGUCGCAGCAGACACCCAGCCAGUCCACCCCCGAAACAACA
..........((.............(((.((.(......))).))).....(((((.(((......)))..)))))............))....... ( -16.50)
>DroSec_CAF1 2191 97 - 1
CACAUCCACAUCAACACCCACGUCCGCCUCCAGUAGCAUCAGCGGCAGUAUGUUGGAGUCGCAGCAGACACCCGACAAGUCCACCCCCGAAACAACA
..........((.........(.((((..............)))))....((((((.(((......)))..))))))...........))....... ( -15.34)
>DroEre_CAF1 2208 85 - 1
CACAU------CCACACCCACGUUCGCCUCCAGCAGC------AGCAGCUUGCUGGAGUCGCAGCAGAUACCCAACAAUUCCACCCCCGAAACAACA
.....------..........(((((.((((((((((------....)).)))))))).)).)))................................ ( -20.80)
>DroYak_CAF1 907 91 - 1
CACAUCUACACCCACACCCAAGUCCGCCUCCAGCAGC------AGCAGCAUGCUGGAGUCGCAGCAGACACCCAACGAUUCCACCCCCGAUACAACA
.....................(((.((((((((((((------....)).)))))))).....)).)))............................ ( -20.60)
>consensus
CACAUCCACAUCAACACCCACGUCCGCCUCCAGCAGC______AGCAGCAUGCUGGAGUCGCAGCAGACACCCAACAAGUCCACCCCCGAAACAACA
.....................(((.((((((((((((..........)).)))))))).....)).)))............................ (-15.69 = -14.50 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:36 2006