Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,999,393 – 12,999,489 |
Length | 96 |
Max. P | 0.694978 |
Location | 12,999,393 – 12,999,489 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -23.42 |
Energy contribution | -23.70 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.31 |
Structure conservation index | 0.87 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12999393 96 + 22407834 AGAAAAAGGCACUGGGCCGCAACCGGGACAGGAUCCGGGGAAAAUGCGUAAAAGCAAAGCAGGAAUUACGCGGCGGGUAGAGUAAUUGUCCGGGCA ........((.(((((((((..(((((......)))))......(((......))).............))))).....((....))..)))))). ( -28.20) >DroSec_CAF1 24613 96 + 1 AGAAAAAGGCACUGGGACGCAACCGGGACAGGAUCCGGGGAAAAUGCGUAAAGGCAAAGCAGGAAUUACGCGGCGGGUGGAGUAAUUGUCCGGGCA ........((.((...(((((.((.(((.....))).)).....)))))..))))...((.((((((((.(.(....).).)))))..)))..)). ( -25.90) >DroSim_CAF1 23517 96 + 1 AGAAAAAGGCACUGGGCCGCAACCGGGACAGGAUCCGGGGAAAAUGCGUAAAGGCAAAGCAGGAAUUACGCGGCGGGUGGAGUAAUUGUCCGGGCA ........((.(((((((((..(((((......)))))......(((((((..((...)).....)))))))))))...((....)).))))))). ( -28.40) >DroEre_CAF1 26249 96 + 1 AGAAAAAGGCACCGGUCCGCGACCGGAACAGGGACCGGGGAAAAUGCGUAAAGGCAAAGCAGGAAUUACGCGGCGGGUGGAGUAAUUGUCUGGGCA .........((((.(.(((((.((((........))))......(((......)))............)))))).)))).......(((....))) ( -27.60) >DroYak_CAF1 23670 96 + 1 AGAAAAAGGCACUGGGCCACAACCGGAACAGGGUCCGGGGAAAAUGCGUAAAGGCAAAGGAGGAAUUACGCGGCGGGUGGAGUAAUUGUCUGGGCA ........((.(..((((((..(((((......)))))......(((((((...(.......)..)))))))....)))((....)))))..))). ( -24.80) >consensus AGAAAAAGGCACUGGGCCGCAACCGGGACAGGAUCCGGGGAAAAUGCGUAAAGGCAAAGCAGGAAUUACGCGGCGGGUGGAGUAAUUGUCCGGGCA ........((.((((((.((..(((((......)))))......(((......)))..))...((((((.(.(....).).)))))))))))))). (-23.42 = -23.70 + 0.28)
Location | 12,999,393 – 12,999,489 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -19.22 |
Energy contribution | -18.86 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.17 |
Structure conservation index | 0.92 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12999393 96 - 22407834 UGCCCGGACAAUUACUCUACCCGCCGCGUAAUUCCUGCUUUGCUUUUACGCAUUUUCCCCGGAUCCUGUCCCGGUUGCGGCCCAGUGCCUUUUUCU .(((.(((((...............((((((.....((...))..))))))....((....))...))))).)))...(((.....)))....... ( -21.30) >DroSec_CAF1 24613 96 - 1 UGCCCGGACAAUUACUCCACCCGCCGCGUAAUUCCUGCUUUGCCUUUACGCAUUUUCCCCGGAUCCUGUCCCGGUUGCGUCCCAGUGCCUUUUUCU .((..((((................((((((...(......)...)))))).......((((........))))....))))..)).......... ( -19.40) >DroSim_CAF1 23517 96 - 1 UGCCCGGACAAUUACUCCACCCGCCGCGUAAUUCCUGCUUUGCCUUUACGCAUUUUCCCCGGAUCCUGUCCCGGUUGCGGCCCAGUGCCUUUUUCU .((.((((.......)))..((((.((((((...(......)...)))))).......((((........))))..))))....).))........ ( -21.60) >DroEre_CAF1 26249 96 - 1 UGCCCAGACAAUUACUCCACCCGCCGCGUAAUUCCUGCUUUGCCUUUACGCAUUUUCCCCGGUCCCUGUUCCGGUCGCGGACCGGUGCCUUUUUCU .................((((.((((((............(((......)))......((((........)))).))))).).))))......... ( -22.20) >DroYak_CAF1 23670 96 - 1 UGCCCAGACAAUUACUCCACCCGCCGCGUAAUUCCUCCUUUGCCUUUACGCAUUUUCCCCGGACCCUGUUCCGGUUGUGGCCCAGUGCCUUUUUCU .................(((..(((((((((...(......)...)))))).......(((((......)))))....)))...)))......... ( -20.40) >consensus UGCCCGGACAAUUACUCCACCCGCCGCGUAAUUCCUGCUUUGCCUUUACGCAUUUUCCCCGGAUCCUGUCCCGGUUGCGGCCCAGUGCCUUUUUCU .....(((.((.((((....((((.((((((...(......)...)))))).......((((........))))..))))...))))...)).))) (-19.22 = -18.86 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:34 2006