Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,991,371 – 12,991,470 |
Length | 99 |
Max. P | 0.537543 |
Location | 12,991,371 – 12,991,470 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.88 |
Mean single sequence MFE | -34.55 |
Consensus MFE | -11.01 |
Energy contribution | -13.15 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.21 |
Mean z-score | -2.45 |
Structure conservation index | 0.32 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12991371 99 - 22407834 AGCGGCAUGG-GAUG-GGGUGGGAUUUUUUCCCAAGAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCUC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .(((((((..-((.(-((.(((((.....))))).(((((((((........)))))))))))---------)(((.(--(..((.....))..)).))).))..)))))))--- ( -34.50) >DroPse_CAF1 36091 109 - 1 CGAGGA-CGGGGACGGGGACGG-GA----CCAGGACAAGAGUUAUUACAUUUUAGCUUUUCCUGCAGAGCCACUCCUCGUGCUCGUCUUGCGUUUAUUCUUUCAUCUUCUGGUGG ((((((-((((.(((((((..(-(.----.(((((..(((((((........)))))))))))).....))..))))))).)))))))).))..........((((....)))). ( -41.60) >DroSec_CAF1 16706 99 - 1 AGCGGCAAGGGGGUG-CGUUG-GGAUUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCUC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .((((((.((((...-.((((-(((....)))))))((((((((........)))))))))))---------)(((.(--(..((.....))..)).)))......))))))--- ( -36.60) >DroSim_CAF1 15480 100 - 1 AGCGGCAAGGGGGUG-GGCUGGGGAUUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCUC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .((((((((((..((-(((((((((....))))...((((((((........))))))))...---------))))))--)..).))))))....(..(......)..))))--- ( -36.20) >DroYak_CAF1 15659 98 - 1 AGCGGCGAGG-GGUG-GAAUGG-GAAUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU---------CGGCGC--GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC--- .(((((((((-....-...(((-((....)))))..((((((((........)))))))))))---------)(((((--(..((.....))..)))))).......)))))--- ( -35.00) >DroAna_CAF1 23704 90 - 1 AGGGAAAAGGGGGCG-GGG-----------CACGACAAGAGUUAUUACAUUCUAGCGUUUCCU---------CUGCUC--UUUCGUCUUGCGUUUGUGCUUUCAUCUUCUACU-- .((((..((((((((-(((-----------.(((.(.(((((......))))).))))...))---------))))))--)))..))))(((....)))..............-- ( -23.40) >consensus AGCGGCAAGGGGGUG_GGAUGG_GAUUUUUCCCAACAAGAGUUAUUACAUUUUAGCUUUUCCU_________CGGCUC__GUUCGUCUUGCGUUUGUGCUUUCAUGUGCUGC___ .((((((.(((((((.(((((...............((((((((........)))))))).............(((........)))...))))).)))))))...))))))... (-11.01 = -13.15 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:29 2006