Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,982,317 – 12,982,410 |
Length | 93 |
Max. P | 0.986250 |
Location | 12,982,317 – 12,982,410 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.28 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -17.28 |
Energy contribution | -17.17 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.71 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12982317 93 + 22407834 ------CCCAAGUCUAUGAAAAUUAAAUGAGAAUUUAAUUUUUUUUGUGUGAGUGCCUGCCUCUUGCAGGCGUGUGCGUAUGUGUGCGAGAAAGAGAGA ------..((...(...(((((((((((....)))))))))))...)..)).....((...(((((((.(((((....))))).))))))).))..... ( -21.70) >DroSec_CAF1 6636 90 + 1 AUUUCUCAUAUGUUUAUGUAAAUUAAAUGAGAAUUUACUU---UUUGUGUGUGUGUCUGCCUCUUGCAGACGUGUGCGUAUGUGUGCGAG------AGA .((((((.((..(.((((((((((.......)))))))..---.....(((..(((((((.....)))))))..)))))).)..)).)))------))) ( -25.50) >DroSim_CAF1 6189 95 + 1 AUUUUUCAUAUGUUUAUGUAAAUUAAAUGAGAAUUUACUUU--UUUGUGUGUGUGUCUGCCUCUUGCAGACGUGUGCGUAUGUGUGCGAGA--GAGAGA ......((((((.....(((((((.......)))))))...--..))))))....(((..((((((((.(((((....))))).)))))))--)..))) ( -25.50) >consensus AUUU_UCAUAUGUUUAUGUAAAUUAAAUGAGAAUUUACUUU__UUUGUGUGUGUGUCUGCCUCUUGCAGACGUGUGCGUAUGUGUGCGAGA__GAGAGA ...........((.((((((...(((((....)))))...........(((..(((((((.....)))))))..))).)))))).))............ (-17.28 = -17.17 + -0.11)
Location | 12,982,317 – 12,982,410 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 83.28 |
Mean single sequence MFE | -17.29 |
Consensus MFE | -13.11 |
Energy contribution | -13.33 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -3.21 |
Structure conservation index | 0.76 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12982317 93 - 22407834 UCUCUCUUUCUCGCACACAUACGCACACGCCUGCAAGAGGCAGGCACUCACACAAAAAAAAUUAAAUUCUCAUUUAAUUUUCAUAGACUUGGG------ ............((........))....((((((.....)))))).((((.......((((((((((....))))))))))........))))------ ( -18.16) >DroSec_CAF1 6636 90 - 1 UCU------CUCGCACACAUACGCACACGUCUGCAAGAGGCAGACACACACACAAA---AAGUAAAUUCUCAUUUAAUUUACAUAAACAUAUGAGAAAU ..(------(((((........))....((((((.....))))))...........---..(((((((.......)))))))..........))))... ( -18.60) >DroSim_CAF1 6189 95 - 1 UCUCUC--UCUCGCACACAUACGCACACGUCUGCAAGAGGCAGACACACACACAAA--AAAGUAAAUUCUCAUUUAAUUUACAUAAACAUAUGAAAAAU ......--.........((((.......((((((.....))))))...........--...(((((((.......))))))).......))))...... ( -15.10) >consensus UCUCUC__UCUCGCACACAUACGCACACGUCUGCAAGAGGCAGACACACACACAAA__AAAGUAAAUUCUCAUUUAAUUUACAUAAACAUAUGA_AAAU ............((........))....((((((.....))))))................(((((((.......)))))))................. (-13.11 = -13.33 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:27 2006