Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,973,637 – 12,973,757 |
Length | 120 |
Max. P | 0.767800 |
Location | 12,973,637 – 12,973,757 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -16.54 |
Energy contribution | -17.14 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.91 |
Structure conservation index | 0.68 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12973637 120 - 22407834 CCCCUUUUUUUUUUAUUACCAUUUUAAGUAAAAAAAAGAAACUGACAGCGGUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC ....(((((((((((((.........)))))))))))))..........((..((((((((((.(((((.....((...))......(((....)))..))))).))))))))))..)). ( -28.30) >DroSec_CAF1 18245 114 - 1 CC---UUUUUUUCUACA---AAUUUAAGUUAAAAAAAGAAGCUCACAACGCUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC .(---(((((((..((.---.......)).))))))))...........((.(((((((((((.(((((.....((...))......(((....)))..))))).))))))))))))).. ( -21.90) >DroSim_CAF1 19367 116 - 1 CC---UUUUUUUGUAUAACCAAUUUAAGU-AAAAAAAGAAACUAACAGCGCUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC .(---((((((((..(((.....)))..)-))))))))...........((.(((((((((((.(((((.....((...))......(((....)))..))))).))))))))))))).. ( -23.10) >DroEre_CAF1 6879 108 - 1 ------U-----UUAAUACCAUGUUGGGC-AAAAAAUUAAACGUACUGCGGAUGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGAUAUUUGCCAAUGGUUUGAGUUUUUGCUGUCC ------.-----..............(((-(((((.((((((....(((((((.(((.....)))......)))))))..(((((......))))).....)))))).)))))))).... ( -24.20) >DroYak_CAF1 21216 113 - 1 ------UUUUGUUUAAUACAAUGUAAGGC-AAAAAAUGAAAAUUACUGCGGUGGCAAAAACGUUGAUUAAAAUCCGCAUCGUAAACAGAUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC ------..((((.....))))......((-(...(((....)))..)))((..((((((((((.(((....))).))...(((((......)))))...........))))))))..)). ( -23.60) >consensus CC___UUUUUUUUUAAUACCAUUUUAAGU_AAAAAAAGAAACUUACAGCGGUGGCAAAAACUUUGAUUAAAAUCCGCAUCGUAAAAAGGUAUUUGCCAAUGAUUUAAGUUUUUGCUGCCC .................................................((((((((((((((.(((((......(((..(((......))).)))...))))).)))))))))))))). (-16.54 = -17.14 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:09 2006