Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,335,838 – 1,335,946 |
Length | 108 |
Max. P | 0.908381 |
Location | 1,335,838 – 1,335,946 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.06 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -8.79 |
Energy contribution | -9.27 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.25 |
Mean z-score | -2.07 |
Structure conservation index | 0.39 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1335838 108 - 22407834 AAUGAAAGGGAAUUUGAAAGUGAUGAGUAAAGAAUCCUUACGAAAUUUUAAUGAGGAUUCAUAAGGCUUGUGACUUAGGAUACAAACUGUGG------------UAAUGACUCAAAAAAU ............(((((((((.(..(((...(((((((((...........))))))))).....)))..).))))....(((.....))).------------.......))))).... ( -21.00) >DroSec_CAF1 93208 108 - 1 AAUGAAAGGGAAUUCGAAAGUGAUGAGUGAAGAAU------------GUAAUCAGGAUUCAUAAGGCUUGUGACGUAGGAUACAAAGAGUUGAAUGGCAUAAGCGAAUGACUCAAAAAAG .......(((.((((...........(((((...(------------(....))...)))))...(((((((.(((..(((.......)))..))).)))))))))))..)))....... ( -19.80) >DroSim_CAF1 97115 108 - 1 AAUGAAAGGGAAUUCGAAAGUGAUGAGUGAAGAAU------------GUAAUCAGGAUUCAUAAGGCUUGUAACUUAGGAUACAAAGAGUUGAAUGGCAUAAGCGAAUGACUCAAAAAAG .......(((.(((((..........(((((...(------------(....))...)))))...(((..((((((..........))))))...))).....)))))..)))....... ( -18.10) >DroEre_CAF1 106406 102 - 1 AAUGAAAGAGAAUUCGAAAAUGCUGAGUGAAGA-CCCUGGCGAAAGUGUAAUGAGGAUUCAUAAGGCUUGUGACUUAGCGUGCAGAG--CU-------------GAAUGGCUCAAAA--U ...............(...(((((((((.(.((-.(((.((....))...(((......))).))).)).).))))))))).).(((--((-------------....)))))....--. ( -26.00) >DroYak_CAF1 96891 119 - 1 AAUGAAAGAGAAUUCGAAAAUGAUGAGUGAAGAAUCCGGACGAAAGUGUAAUGAGGAUUCAUGGGGCUUGUGACUUAGAGUACAAAGAGUUGACUGGCACCAGCGAAUGGCUCAAAA-UU .......(((.(((((...............(((((((.((....)).).....)))))).(((.(((.(((((((..........))))).)).))).))).)))))..)))....-.. ( -28.70) >consensus AAUGAAAGGGAAUUCGAAAGUGAUGAGUGAAGAAUCC___CGAAA_UGUAAUGAGGAUUCAUAAGGCUUGUGACUUAGGAUACAAAGAGUUGA_UGGCA__AGCGAAUGACUCAAAAAAU .......................(((((...((((((.................)))))).......(((((........)))))........................)))))...... ( -8.79 = -9.27 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:35 2006