Locus 4527

Sequence ID 2L_DroMel_CAF1
Location 12,972,065 – 12,972,158
Length 93
Max. P 0.742189
window7125

overview

Window 5

Location 12,972,065 – 12,972,158
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.97
Mean single sequence MFE -22.71
Consensus MFE -12.60
Energy contribution -14.40
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.55
SVM decision value 0.45
SVM RNA-class probability 0.742189
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12972065 93 - 22407834
AUAACUUCAUUUGGCGGCCAUGGGCAUUCAUUUAGUUUAUGUCUGUGCAACUCGGGCGGUACGC----------GAGUC-------CCCCUUCA--CAUCGCCGCCCAU--------CUC
............((((((.(((.((((.(((.......)))...)))).....(((.((.((..----------..)))-------))))....--))).))))))...--------... ( -31.40)
>DroSec_CAF1 16932 92 - 1
AUAACUUCAUUUGGCGGCCAUGGGCAUUCAUUUAGUUUAUGUCUGUGCAACUCGCGUA--CCGC----------CCGUCGCCC------CUCCG--CAUCGCCGCCCAU--------CUC
............((((((.((((((...(((.......)))...((((.......)))--).))----------)))).((..------....)--)...))))))...--------... ( -25.00)
>DroSim_CAF1 17880 98 - 1
AUAACUUCAUUUGGCGGCCAUGGGCAUUCAUUUAGUUUAUGUCUGUGCAACUCGCGUA--CCGC----------CCGUCUCCCGUCCCGCUCCA--CAUCGCCGCCCAU--------CUC
............((((((.((((((...(((.......)))...((((.......)))--).))----------)))).....((........)--)...))))))...--------... ( -22.80)
>DroEre_CAF1 5399 103 - 1
AUAACUUCAUUUGGCGGCCAUGGGCAUUCAUUUAGUUUAUGUCUGUGCAACUCGCG--------------CUCCACAUCUCC--A-CAUCUCCACCCAUCUCCACCCAUCUCCAUCUCUC
............((.((..(((((..............((((..((((.....)))--------------)...))))....--.-........)))))..)).)).............. ( -17.23)
>DroYak_CAF1 18673 115 - 1
AUAACUUCAUUUGGCGGCCAUGGGCAUUCAUUUAGUUUAUGUCUGUGCAACUCGCGUA--CCGCUGCCCCCUCCCCAUCUCC--UCCAUCUCCAC-CAUCUCCACACAUCUCCAUCUCUC
...........(((.((..((((((((.(((.......)))...)))).....(((..--.)))..................--.))))..)).)-))...................... ( -17.10)
>consensus
AUAACUUCAUUUGGCGGCCAUGGGCAUUCAUUUAGUUUAUGUCUGUGCAACUCGCGUA__CCGC__________CCGUCUCC____CAUCUCCA__CAUCGCCGCCCAU________CUC
............((((((.(((.((((.(((.......)))...)))).....(((.....)))................................))).)))))).............. (-12.60 = -14.40 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:04 2006