Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,964,557 – 12,964,677 |
Length | 120 |
Max. P | 0.858414 |
Location | 12,964,557 – 12,964,677 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -31.91 |
Consensus MFE | -29.60 |
Energy contribution | -29.82 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.21 |
Structure conservation index | 0.93 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12964557 120 - 22407834 UAUGCACUCUUUGAUUGCAUGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA ...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42) >DroPse_CAF1 44076 120 - 1 UAUGCACUCUUUGAUUGCACGGAGCAGCGAGCAUCGGGGGCACAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGCUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA ...(((....((((((.((.((((((((((((((.(.(((((.((((((((....)))).))))..))))).).))).))))))))..((((.....)))).)))))))))))..))).. ( -30.90) >DroSec_CAF1 9343 120 - 1 UAUGCACUCUUUGAUUGCAUGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA ...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42) >DroSim_CAF1 10169 120 - 1 UAUGCACUCUUUGAUUGCAUGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA ...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42) >DroYak_CAF1 10869 120 - 1 UAUGCACUCUUUGAUUGCACGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCG ...(((....((((((.((.((((..((((((((..(((((((((.((((.((...)).))))....)))))))....))..))))))))...........))))))))))))..))).. ( -32.42) >DroPer_CAF1 42428 120 - 1 UAUGCACUCUUUGAUUGCACGGAGCAGCGAGCAUCGGGGGCACAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGCUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA ...(((....((((((.((.((((((((((((((.(.(((((.((((((((....)))).))))..))))).).))).))))))))..((((.....)))).)))))))))))..))).. ( -30.90) >consensus UAUGCACUCUUUGAUUGCACGGAGCUGCGAGCAUUGAGGGCAAAUUCUCGACGACUCGACGAGUUUUGUUUGCCAUGUUUUGGUGCUUGUUUUUAUUGAAUUUCCUGAAUUAAUUUGCCA ...(((....((((((.((.((((..(((((((((((((((((((.((((.((...)).))))....)))))))....))))))))))))...........))))))))))))..))).. (-29.60 = -29.82 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:54 2006