Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,961,998 – 12,962,089 |
Length | 91 |
Max. P | 0.700695 |
Location | 12,961,998 – 12,962,089 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -17.23 |
Consensus MFE | -13.82 |
Energy contribution | -14.70 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.05 |
Mean z-score | -1.78 |
Structure conservation index | 0.80 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12961998 91 + 22407834 UUCUUUCGCCAAUG----UUAAUUAGCUUUAUUCCGCAAGUUUAGCUGCUUUCAACUUUACUUAUCGAUUGGCGAGGACACCCAUUUCCAUUUCC .....((((((((.----.......((........))((((..((.((....)).))..))))....))))))))(((........)))...... ( -18.00) >DroSec_CAF1 6828 95 + 1 UUCUCUCGCCAAUGUGAGUUAAUUAGCUUUAUUCCGCAAGUUUAGCUGCUUUCAACUUUACUUAUCGAUUUGCGAGGACACCCAUUUCCUUUUCC .((.(((((.(((((((((.((.(((((......(....)...))))).))........))))))..))).)))))))................. ( -15.60) >DroSim_CAF1 7603 95 + 1 UUCUCUCGCCAAUGUGAGUUAAUUAGCUUUAUUCCGCAAGUUUAGCUGCUUUCAACUUUACUUAUCGAUUUGCGAGGACACCCAUUUCCGUUUCC .((.(((((.(((((((((.((.(((((......(....)...))))).))........))))))..))).)))))))................. ( -15.60) >DroYak_CAF1 8375 90 + 1 -----UCGCCAAUCUGAGUUAAUUAGCUUUAUUCCGCAAGUUUAGCUGCUUUCAACUUUACUUAUCGAUUGGCGAGCACACCCAUUUCCCUUUCC -----((((((((((((((.((.(((((......(....)...))))).))........)))))..))))))))).................... ( -19.70) >consensus UUCUCUCGCCAAUGUGAGUUAAUUAGCUUUAUUCCGCAAGUUUAGCUGCUUUCAACUUUACUUAUCGAUUGGCGAGGACACCCAUUUCCAUUUCC ...((((((((((............((........))((((..((.((....)).))..))))....)))))))))).................. (-13.82 = -14.70 + 0.88)
Location | 12,961,998 – 12,962,089 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -20.35 |
Consensus MFE | -16.15 |
Energy contribution | -16.65 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12961998 91 - 22407834 GGAAAUGGAAAUGGGUGUCCUCGCCAAUCGAUAAGUAAAGUUGAAAGCAGCUAAACUUGCGGAAUAAAGCUAAUUAA----CAUUGGCGAAAGAA (((.((....)).....)))((((((((.(..((((..(((((....)))))..))))((........)).......----)))))))))..... ( -20.40) >DroSec_CAF1 6828 95 - 1 GGAAAAGGAAAUGGGUGUCCUCGCAAAUCGAUAAGUAAAGUUGAAAGCAGCUAAACUUGCGGAAUAAAGCUAAUUAACUCACAUUGGCGAGAGAA .................(((((.....(((.(((((..(((((....)))))..))))))))......((((((........))))))))).)). ( -18.80) >DroSim_CAF1 7603 95 - 1 GGAAACGGAAAUGGGUGUCCUCGCAAAUCGAUAAGUAAAGUUGAAAGCAGCUAAACUUGCGGAAUAAAGCUAAUUAACUCACAUUGGCGAGAGAA (....)...........(((((.....(((.(((((..(((((....)))))..))))))))......((((((........))))))))).)). ( -20.30) >DroYak_CAF1 8375 90 - 1 GGAAAGGGAAAUGGGUGUGCUCGCCAAUCGAUAAGUAAAGUUGAAAGCAGCUAAACUUGCGGAAUAAAGCUAAUUAACUCAGAUUGGCGA----- ....................(((((((((...((((..(((((....)))))..))))((........))...........)))))))))----- ( -21.90) >consensus GGAAAAGGAAAUGGGUGUCCUCGCAAAUCGAUAAGUAAAGUUGAAAGCAGCUAAACUUGCGGAAUAAAGCUAAUUAACUCACAUUGGCGAGAGAA .............((((....))))..(((.(((((..(((((....)))))..))))))))......((((((........))))))....... (-16.15 = -16.65 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:50 2006