Locus 4520

Sequence ID 2L_DroMel_CAF1
Location 12,958,855 – 12,958,955
Length 100
Max. P 0.973756
window7109

overview

Window 9

Location 12,958,855 – 12,958,955
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 97.97
Mean single sequence MFE -18.70
Consensus MFE -18.16
Energy contribution -18.15
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.16
Structure conservation index 0.97
SVM decision value 1.72
SVM RNA-class probability 0.973756
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12958855 100 - 22407834
CUGACGCUUGUUUCCGAAAAAUUAUGUGCAAACAAAGUUGAAUUAAAAAAGGAGGAAAAAGCACAAAAAGGCGAAUAAAAUUGUCAAAUAAGCGCAAAGA
.((.(((((((((...........(((((...............................)))))....(((((......)))))))))))))))).... ( -18.08)
>DroSec_CAF1 3629 97 - 1
CUGACGCUUGUUUCCGAAAAAUUAUGUGCAAACAAAGUUGAAUUAAAAAAG---GAAAAAGCACAAAAAGGCGAAUAAAAUUGUCAAAUAAGCGCAAAGA
.((.(((((((((...........(((((........((........))..---......)))))....(((((......)))))))))))))))).... ( -18.39)
>DroSim_CAF1 4457 97 - 1
CUGACGCUUGUUUCCGAAAAAUUAUGUGCAAACAAAGUUGAAUUAAAAAAG---GAAAAAGCACAAAAAGGCGAAUAAAAUUGUCAAAUAAGCGCAAAGA
.((.(((((((((...........(((((........((........))..---......)))))....(((((......)))))))))))))))).... ( -18.39)
>DroYak_CAF1 3771 97 - 1
CUGACGCUUGUUUCCGAAAAAUUAUGUGCAAACAAAGUUGAAUUAAAAAAG---GAAAAUGCACAAAAAGGCGAAUAAAAUUGUCAAAUAAGCGCAAAGA
.((.(((((((((...........((((((.......((........))..---.....))))))....(((((......)))))))))))))))).... ( -19.94)
>consensus
CUGACGCUUGUUUCCGAAAAAUUAUGUGCAAACAAAGUUGAAUUAAAAAAG___GAAAAAGCACAAAAAGGCGAAUAAAAUUGUCAAAUAAGCGCAAAGA
.((.(((((((((...........(((((...............................)))))....(((((......)))))))))))))))).... (-18.16 = -18.15 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:48 2006