Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,335,514 – 1,335,651 |
Length | 137 |
Max. P | 0.701435 |
Location | 1,335,514 – 1,335,615 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -14.95 |
Energy contribution | -15.45 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.64 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1335514 101 - 22407834 CACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUCUGCUGCGGAUGCCAUCAAUAACUUUGGCAGCAUAUUUGACUUCCUACCC--GGUUUU-----------------U ...(((((.((((.........(((((((((....))))))))).((((((((...))..(((.....)))))))))..............)))--).))))-----------------) ( -21.20) >DroEre_CAF1 106084 101 - 1 CACAAAAAAUGGGAAAACAUUAAACAGAUUUGAGCAAAUUUGUUUUGGUGCGGGUGCCAUCAAUAACUUUGGCAGCAUAUUUGACUUGCAGCCC--AGUUGU-----------------U .((((....((((...((...((((((((((....))))))))))..))((((((((((..........))))..((....))))))))..)))--).))))-----------------. ( -27.30) >DroWil_CAF1 129185 120 - 1 GAAAAUAAAUGGGAAAACAUUAAACAGAUUUAAGUAAAUUUGUUUUGCUGCGUGUGCCAUCAAUAACUUUGGCAGCAUAUUUGACUUGCCAACCCCAGUGAGUACACCAUUCUGCCCUUG ..........(((........((((((((((....))))))))))...((.((((((..(((......(((((((((....)).).))))))......))))))))))).....)))... ( -27.40) >DroYak_CAF1 96567 92 - 1 CACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGGGUGCCAUCAAUAACUUUGGCAGCAUAUUUGACAUCCCAC---------------------------- .........(((((...((((((((((((((....))))))).)))))))..(.(((((..........))))).)..........))))).---------------------------- ( -23.30) >DroAna_CAF1 119548 103 - 1 GACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGUAUGCCAUCAAUAACUUUGGCAGCAUAUUUGACUUGUUACCCUCGGUUUC-----------------C ..........(((..((((..((((((((((....))))))))))..((((...(((((..........)))))))))........)))).)))........-----------------. ( -20.20) >DroPer_CAF1 141779 99 - 1 AGAAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGUGUGCCAUCAAUAACAUUGGCAGCAUAUUUGACUUUCCACC----GCUUC-----------------C .........((((((..((((((((((((((....))))))).))))))).((((((((..........))))).))).......))))))..----.....-----------------. ( -20.80) >consensus CACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGGGUGCCAUCAAUAACUUUGGCAGCAUAUUUGACUUGCCACCC___GUUUC_________________C .......((((......))))((((((((((....))))))))))..((((...(((((..........))))))))).......................................... (-14.95 = -15.45 + 0.50)
Location | 1,335,535 – 1,335,651 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.97 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -14.95 |
Energy contribution | -15.45 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.56 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1335535 116 - 22407834 AA-AGCGGUAGCUGGGGAUG--AAUCCAGUUAA-GGACGGCACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUCUGCUGCGGAUGCCAUCAAUAACUUUGGCAGCAUAU ..-.((..((((((((....--..)))))))).-.(.(((((.....((((......)))).(((((((((....))))))))).))))))...(((((..........))))))).... ( -29.70) >DroEre_CAF1 106105 116 - 1 AAAAGCGGUGGCUGGGAUUG---GGGCGGCUAA-GGGCGGCACAAAAAAUGGGAAAACAUUAAACAGAUUUGAGCAAAUUUGUUUUGGUGCGGGUGCCAUCAAUAACUUUGGCAGCAUAU ....((.((.(..(..((((---(((((((...-..)).((((....((((......))))((((((((((....))))))))))..))))...)))).)))))..)..).)).)).... ( -31.40) >DroWil_CAF1 129225 104 - 1 ---AGCAA-AGCUUGGCAAC--AAU----UUU------UGGAAAAUAAAUGGGAAAACAUUAAACAGAUUUAAGUAAAUUUGUUUUGCUGCGUGUGCCAUCAAUAACUUUGGCAGCAUAU ---..(((-((.(((....)--)).----)))------)).......((((......))))((((((((((....))))))))))((((((..((..........))....))))))... ( -22.00) >DroYak_CAF1 96579 107 - 1 AAAAGCGGUGA------------AGCCGGUUAA-GGGCGGCACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGGGUGCCAUCAAUAACUUUGGCAGCAUAU .......(((.------------.((((((((.-.(..(((((....((((......))))((((((((((....))))))))))........)))))..)..)))))..)))..))).. ( -28.30) >DroAna_CAF1 119571 103 - 1 -----------CUGGAGA-----A-GCAGUUAAAGGGGCGGACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGUAUGCCAUCAAUAACUUUGGCAGCAUAU -----------.......-----.-((.(((((((.((((.((....((((......))))((((((((((....))))))))))......)).))))........))))))).)).... ( -21.90) >DroPer_CAF1 141798 117 - 1 AAAUGUUGU--GUGGGGAGGGAAAACCAGUUAA-GGGCGCAGAAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGUGUGCCAUCAAUAACAUUGGCAGCAUAU ..(((((((--.......((.....)).((((.-.((((((......((((......))))((((((((((....)))))))))).......)))))).....))))....))))))).. ( -28.00) >consensus AA_AGCGGU_GCUGGGGA_G___AGCCAGUUAA_GGGCGGCACAAAAAAUGGGAAAACAUUAAACAGAUUUAAGCAAAUUUGUUUUGGUGCGGGUGCCAUCAAUAACUUUGGCAGCAUAU ...............................................((((......))))((((((((((....))))))))))..((((...(((((..........))))))))).. (-14.95 = -15.45 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:34 2006