Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,955,396 – 12,955,508 |
Length | 112 |
Max. P | 0.881554 |
Location | 12,955,396 – 12,955,508 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.14 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -16.73 |
Energy contribution | -16.73 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.68 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12955396 112 + 22407834 CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAAAUUCGAAUGGAAAAACUCAUUGUACAUAUAUAUACAUUUGAUGGUGUGGGAAAAUACAAAUUUGCGAACAGA .(((..(....).)))..........(((((((.(((((........)))))........((((......(((((........)))))......)))))))))))....... ( -22.50) >DroSec_CAF1 166 95 + 1 CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUUUUCCAGAUUCGAAUGGAAGAACUCA-----------------UUCGAUGGUGUGGGAAAAUACAAAUUUGGGAACAAA .(((..(....).)))..............(((((((((.((((((((((......)))-----------------)))))..)).))))))))).....((((....)))) ( -27.30) >DroSim_CAF1 286 95 + 1 CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAGAUUCGAAUGGAAAAACUCA-----------------UUCGAUGGUGUGGGAAAAUACAAAUUUGGGAACAAA .(((..(....).)))..................((((((((((((((((......)))-----------------)))))..((((......))))..))))))))..... ( -24.50) >DroYak_CAF1 268 102 + 1 CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAGAUUCGAAUGGAAAAACUCUUUGUA----------CAUUCGAUGGUGUGGGAAAAUACGAAUUUGGUAACGAA .(((..(....).)))....................(((((((((((((..(((....)))...----------)))))....((((......))))))))))))....... ( -23.40) >consensus CGGCAGGGAGACAGCCAGAUAAAUGAGCAAAUUAUUCCAGAUUCGAAUGGAAAAACUCA_________________UUCGAUGGUGUGGGAAAAUACAAAUUUGGGAACAAA .(((..(....).)))...........((((((.(((((........)))))...............................((((......)))).))))))........ (-16.73 = -16.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:41 2006