Locus 4514

Sequence ID 2L_DroMel_CAF1
Location 12,949,686 – 12,949,776
Length 90
Max. P 0.759170
window7099

overview

Window 9

Location 12,949,686 – 12,949,776
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.38
Mean single sequence MFE -21.52
Consensus MFE -12.83
Energy contribution -13.83
Covariance contribution 1.00
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.60
SVM decision value 0.50
SVM RNA-class probability 0.759170
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12949686 90 - 22407834
GAUGGGUCUCGGCCCCAACACCGAAAUCCACACCCAUUUCCCGGAC--------------CCCCCCUGGGGGAUAUCUCUGUUAUAUUUAUGUUUUCAGCAUGU
..(((((.((((........)))).))))).....((..(((((..--------------.....)))))..))..............(((((.....))))). ( -23.30)
>DroSec_CAF1 121516 88 - 1
GACGGGUCUCGGCCCCAACACCGAAAUACACACCCAUUUCCCAG----------------CCCUCCUGGGGGAUAUCUCUGUUAUAUUUAUGUUUUCAGCAUGU
(((((((.((((........)))).......))))((..(((((----------------.....)))))..))......))).....(((((.....))))). ( -21.50)
>DroSim_CAF1 127043 88 - 1
GACGGGUCUCGGCCCCAACACCGAAAUCCACACCCAUUUCCCAG----------------CCCCCCUGGGGGAUAUCUCUGUUAUAUUUAUGUUUUCAGCAUGU
(((((((.((((........)))).))))......((..(((((----------------.....)))))..))......))).....(((((.....))))). ( -23.90)
>DroEre_CAF1 128476 94 - 1
GAAGGGUCUCGGCCCCAACACCGAAAUCCACACCCAUUUUCCGGCCCUC----------CCCCCCCUGGGGGAUAUCUCUGUUAUAUUUAUGUUUUCAGCAUGU
...((((.((((........)))).))))............(((...((----------((((....)))))).....))).......(((((.....))))). ( -23.20)
>DroYak_CAF1 123834 92 - 1
GACGGGUCUC------------GAAAUCCACACCCAUUUUCCGGACCUCCCAACCCCACCCCCCCCUGGGGGAUAUCUCUGUUAUAUUUAUGUUUUCAGCAUGU
(((((((((.------------((((...........)))).))))))..........(((((....)))))........))).....(((((.....))))). ( -22.40)
>DroAna_CAF1 142679 69 - 1
GACGACU---GGUCCGUCCCUCAAAAUCC--------------------------------GCCCCUUGGGGAUAUCCCGGGUAUAUUUAUGUUUUCAGCAUGU
.....((---((...(((((.(((.....--------------------------------.....))))))))...)))).......(((((.....))))). ( -14.80)
>consensus
GACGGGUCUCGGCCCCAACACCGAAAUCCACACCCAUUUCCCGG________________CCCCCCUGGGGGAUAUCUCUGUUAUAUUUAUGUUUUCAGCAUGU
...((((.((((........)))).))))...............................((((....))))................(((((.....))))). (-12.83 = -13.83 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:38 2006