Locus 4513

Sequence ID 2L_DroMel_CAF1
Location 12,949,426 – 12,949,534
Length 108
Max. P 0.755913
window7098

overview

Window 8

Location 12,949,426 – 12,949,534
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.86
Mean single sequence MFE -24.95
Consensus MFE -17.80
Energy contribution -17.63
Covariance contribution -0.17
Combinations/Pair 1.07
Mean z-score -1.26
Structure conservation index 0.71
SVM decision value 0.49
SVM RNA-class probability 0.755913
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12949426 108 + 22407834
--------CCCA--CGUCGCCUGAGAUUAUGGCUCGCUUAGUGGGCAAUUAUCGCCUGCAGGGCCCAUAAUUAUUAUCAUCAC--CAGGACCAAGUUGCAUUUUCAUUUCAUAUUCAAAA
--------...(--(....((((.((((((((...(((..(..(((.......)))..)..)))))))))))...........--)))).....))........................ ( -22.40)
>DroVir_CAF1 121606 96 + 1
-------------------CAUGUGAUUAUGGGGCGUUUAGUGGGCAAUUAUCGCCUGCAGCGCCCAUAAUUAUCA---UGCA--GAGUCCUUAGUUGCACUCGCAUUUCAUAUUCAAAG
-------------------....(((.(((((((((((..(..(((.......)))..)))))))).........(---(((.--((((.(......).))))))))..)))).)))... ( -33.00)
>DroGri_CAF1 125529 117 + 1
CACACACACACAAUACACUCAUGAGAUUAUGGCGCAUUUAGUGGGCAAUUAUCGCCUGCAGCGCCCAUAAUUAUCA---CGCAAAGAGUCCUAAGUUGCACUAGCAUUUCAUAUUCAAAG
.....................((((((((((((((.....(..(((.......)))..).))).)))))))).)))---......((((.......(((....)))......)))).... ( -24.52)
>DroYak_CAF1 123565 108 + 1
--------CCCA--CGUCGCCUGAGAUUAUGGCUCGCUUAGUGGGCAAUUAUCGCCUGCAGGGCCCAUAAUUAUUAUCAUCAC--CAGGACCAAGUUGCAUUUUCAUUUCAUAUUCAAAA
--------...(--(....((((.((((((((...(((..(..(((.......)))..)..)))))))))))...........--)))).....))........................ ( -22.40)
>DroMoj_CAF1 153719 96 + 1
-------------------UACGAGAUUAUAGCGCGUUUAGUGGGCAAUUAUCGCCUGCAGCGCCCAUAAUUAUCA---UGCA--GAGUUCUAACUUGCACUCGCAUUUCAUAUUCAAAG
-------------------...((((((((.(.(((((..(..(((.......)))..))))))).)))))).))(---(((.--((((.(......).))))))))............. ( -24.90)
>DroAna_CAF1 142426 108 + 1
--------CCCA--AGUCGCCUGAGAUUAUGGCUCGCUUAGUGGGCAAUUAUCGCCUGCAGGGCCCAUAAUUAUUAUCAUCAC--CAGGACCAAGUUGCAUUUUCAUUUCAUAUUCAAAA
--------..((--(.(..((((.((((((((...(((..(..(((.......)))..)..)))))))))))...........--))))....).)))...................... ( -22.50)
>consensus
________CCCA___GUCGCAUGAGAUUAUGGCGCGCUUAGUGGGCAAUUAUCGCCUGCAGCGCCCAUAAUUAUCA___UCAA__CAGGACCAAGUUGCACUUGCAUUUCAUAUUCAAAA
........................(((((((((((.....(..(((.......)))..).))).))))))))................................................ (-17.80 = -17.63 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:37 2006