Locus 4511

Sequence ID 2L_DroMel_CAF1
Location 12,941,671 – 12,941,791
Length 120
Max. P 0.859082
window7095

overview

Window 5

Location 12,941,671 – 12,941,791
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.42
Mean single sequence MFE -22.74
Consensus MFE -5.87
Energy contribution -6.31
Covariance contribution 0.44
Combinations/Pair 1.48
Mean z-score -1.88
Structure conservation index 0.26
SVM decision value 0.82
SVM RNA-class probability 0.859082
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12941671 120 - 22407834
UACUACUAUUAAUUUGUAAUCAAAUAGGAAAUGGAAAUAUCACAUCAUAUACUGAAAAUACCUGAUUUUCCAACGAUUCCAACUGCUUUUCCUACGAAGCAGUGGCAUUCUUAAAGAGUA
((((.((.....((((....))))((((((.((((((.((((....................))))))))))......(((.(((((((......))))))))))..)))))).)))))) ( -22.55)
>DroSec_CAF1 113478 120 - 1
UCAUACUAUUAAUUUGUAAUCAAAUAGGAAAUGGAAAUAACACAUCAUAUACUGAAAAUACCUGAUUUUCCAACGAUUCCGGCUACUUUUCCUACGAAGCAGUGGUACUCUUAAAGAGUA
....((((((..((((((........((((.((((((......((((..((.(....)))..))))))))))....))))((........))))))))..))))))((((.....)))). ( -19.30)
>DroSim_CAF1 118662 119 - 1
UACUACUAUUAAUUUGUAAUCAAAUAGGAAAUGGAAAUAUCACAUCAUAUACU-AAAAUACCCGAUUUUCCAACGAUUCCGGCUACUUUUCCUACGAAGCAGUGGUACUCUUAAAGAGUA
.((((((.....((((....))))(((((((((((((.(((............-.........))))))))).((....))......)))))))......))))))((((.....)))). ( -21.30)
>DroEre_CAF1 120535 97 - 1
UGCUUCUAUUAAUUUGCAAUUAGGUGGG--AACGGGGAACCAAAUCAUAUACG-G--AUAACCAAUUUUCCUACAAUUCC-----------------AACUGUUUC-CUCUUAAAGAGUA
(((............))).(((((.(((--(((((....))...........(-(--(..........))).........-----------------....)))))-).)))))...... ( -18.60)
>DroYak_CAF1 115850 111 - 1
UGCCACUGUUUGUUUGCAAUUAAAUAAGAAAACGGGGAACCAAAUUAUAAACG-AAAAUAACCCAUUUUCCAAGUAUUUC-------UUGCCUUCG-AGCAGUGGCAUUCUUAAAGAGUA
.(((((((((((...((((..(((((.(((((.(((.................-.......))).)))))....))))).-------))))...))-)))))))))((((.....)))). ( -31.96)
>consensus
UACUACUAUUAAUUUGUAAUCAAAUAGGAAAUGGAAAUACCACAUCAUAUACU_AAAAUACCCGAUUUUCCAACGAUUCC__CU_CUUUUCCUACGAAGCAGUGGCACUCUUAAAGAGUA
.((((((....(((((....))))).((((.((((((.............................))))))....))))....................))))))((((.....)))). ( -5.87 =  -6.31 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:35 2006