Locus 4510

Sequence ID 2L_DroMel_CAF1
Location 12,933,317 – 12,933,419
Length 102
Max. P 0.577686
window7094

overview

Window 4

Location 12,933,317 – 12,933,419
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 83.14
Mean single sequence MFE -23.75
Consensus MFE -17.78
Energy contribution -18.02
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.75
SVM decision value 0.09
SVM RNA-class probability 0.577686
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12933317 102 + 22407834
GCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGUGUAAAAGGAGG-AAGCGGAGCCAAAG-AAGUGAAAGGAGU-AAAGGGGC
((((...((((....((....))....(((.((..((((.(((...)))..))))..))......(.-...)...)))....-.........))))-....)))) ( -23.10)
>DroSec_CAF1 112517 102 + 1
GCUUAACACUCAAAAGCGGAAGUAAGCGCCAUGUGCUGCGGUCGAGGAUGAGCGGAGUAAAAGGAGG-ACGAGGAGCCAAAG-GAGUGAAAGGAGU-AAAGGGGC
((((..(((((....((....))..((.((...((((.((.((......)).)).))))...(....-.)..)).)).....-)))))....))))-........ ( -24.40)
>DroSim_CAF1 117706 102 + 1
GCUUAACACUCAAGAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAGUAAAAGGAGG-ACGAGGAGCCAAAG-GAGUGAAAGGAAU-AAAGGGGC
.(((..(((((....((....))....(((...((((.((.((......)).)).))))...(....-.).....)))....-)))))..)))...-........ ( -23.70)
>DroYak_CAF1 114926 103 + 1
GCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAGUGAAAGGAGU-GAAAGGAGCAAAGG-GAGCCAAAGGAGUGAAAGGGGC
((((..(((((....((....))..(((((....)))))(.((......)).)..........))))-)....)))).....-..(((..............))) ( -24.94)
>DroAna_CAF1 134949 95 + 1
GCUUAACACUCAAAAGCGGAAGUAAGCGUCGUUGGCUGCGGUUGAGGAUGAGUGGAGCG----GAGCGAAGUGGUGCAAACUGAAGUAAAAU------AAGAGGU
((((..(((((....((....))....(((.(..((....))..).)))))))))))).----..((..(((.......)))...)).....------....... ( -22.60)
>consensus
GCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAGUAAAAGGAGG_AAGAGGAGCCAAAG_GAGUGAAAGGAGU_AAAGGGGC
(((((.(.(((....((....))..(((((....)))))....)))).))))).................................................... (-17.78 = -18.02 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:33 2006