Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,334,009 – 1,334,107 |
Length | 98 |
Max. P | 0.505068 |
Location | 1,334,009 – 1,334,107 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -24.29 |
Consensus MFE | -15.09 |
Energy contribution | -16.33 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.67 |
Structure conservation index | 0.62 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1334009 98 + 22407834 UCUAGUCAACCUGGUUCAAUAUUCAGGAAGUGCA------AAAAAGCUUCUGAUUUUAUUACAGGGUACUUGAAAGUACCACGGGUACAUUGGUACAGAAAAUU .(((((..(((((....((((.((((.((((...------.....))))))))...))))....((((((....)))))).)))))..)))))........... ( -23.10) >DroSec_CAF1 91344 98 + 1 UCUAGUCAACCUGGUUCGAUCUUCAGGAAGUGCA------AGAAAGCCUCUGAUUUUAUUACAGGGUACUAGAAAGUACCACGAGAAAAUUGGCUCAGAAAAUU (((((((((.....((((....((((..((.((.------.....))))))))...........((((((....)))))).))))....)))))).)))..... ( -23.00) >DroSim_CAF1 95281 98 + 1 UCUAGUCAACCUGGUUCGAUAUUCAGGAAGUGCA------AAAAAGCCUCUGAUUUUAUUACAGGGUACUAGAAAGUACCACGAGAACAUUGGUACAGAUAAGU ((((((...((((....((((.((((..((.((.------.....))))))))...)))).))))..))))))..((((((.........))))))........ ( -25.30) >DroEre_CAF1 104540 96 + 1 UCUAGUCAACCUGCUUCGGUAUUCAGGAAGUAUA------AAAAAGCCACUGACUUUCUUACAGGGUACUG--AGAUAGCACGGGUAUAUUGGUGCGCUACAGU ..((((...((((((((((((((((((((((...------............)))))))....))))))))--)...)))).))((((....)))))))).... ( -22.16) >DroYak_CAF1 94972 104 + 1 UCUAGUUCACCUGCUUCGAUAUUCAGGGAGUAUACAUAAAAAAAAUCACCUGACUUUCUUACAGGGUACUAGAAAGUACCACGGGUAUACUGGUACACUAAAGU ((((((...((((....((...(((((((................)).)))))...))...))))..))))))..((((((.(......)))))))........ ( -27.89) >consensus UCUAGUCAACCUGGUUCGAUAUUCAGGAAGUGCA______AAAAAGCCUCUGAUUUUAUUACAGGGUACUAGAAAGUACCACGGGUACAUUGGUACAGAAAAGU ((((((...((((.........(((((.....................)))))........))))..))))))..((((((.........))))))........ (-15.09 = -16.33 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:32 2006