Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,924,034 – 12,924,137 |
Length | 103 |
Max. P | 0.581132 |
Location | 12,924,034 – 12,924,137 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.79 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -11.48 |
Energy contribution | -12.18 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.43 |
Mean z-score | -2.03 |
Structure conservation index | 0.42 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12924034 103 - 22407834 AUUUGCU-----------UACUUGUAGUUCAUUUUAGUGUUGAACUCUGACUGACGCUCCUUAGCGUACAUAGUAA------UCAACAUCAUGCACACCCUGCAGGAAUGAGCUAUUUCA .......-----------.....((((((((((((.(((((((...(((....(((((....)))))...)))...------)))))))..((((.....)))))))))))))))).... ( -28.30) >DroSec_CAF1 103201 111 - 1 AUUUGCUAUAGGC---AUUACUUGUAGUUCAUUUUAGUGUUGAACUCUGUCUGACGCUCCUUAGCGUACAUAGUUA------UCAGCAUCAUGCACACCCUGCAGGAAUGCGCUAUUUCA ...((..((((((---(((.(((((((.........(((((((...((((...(((((....)))))..))))...------)))))))..........)))))))))))).))))..)) ( -32.31) >DroSim_CAF1 107211 111 - 1 AUUUGCUAUAGGC---AUUACUUGUAGUUCAUUUUAGUGUUGAACUCUGUCUGACGUUCCUUAGCGUACAUAGUUA------UCAGCAUCAUGCACACCCUGCAGGAAUGCGCUAUUUCA ...((..((((((---(((.(((((((.........(((((((...((((...((((......))))..))))...------)))))))..........)))))))))))).))))..)) ( -30.11) >DroEre_CAF1 109978 111 - 1 AUGGGCUGGAGAA---AUUACUUGUAGUUCAUUUUAGUAUUGAACUCCGACUGACGCUCCUUCGCGUACAUAGUGA------UCAGCAUCAUGCACACCCUGCAGCAAUGCGCUAUUUCA ...(((.((((..---.(((.(((.((((((.........)))))).))).)))..)))).((((.......))))------...((((..((((.....))))...)))))))...... ( -27.30) >DroYak_CAF1 105259 111 - 1 AUUGGCGAUAUAA---AUUACUUGUAGUUCAUUUUAGUAUUGAACUCCGACUGACGCUCCUUCGCGUACAUCGUCA------CAAGCAUCAUGCACACCCUGCUGAAGUGUGCUAUUUCA ..(((((((....---.....(((.((((((.........)))))).)))...((((......))))..)))))))------..........((((((.........))))))....... ( -26.60) >DroAna_CAF1 123804 114 - 1 AUUUGCAUUAAGCCUACUUACUUAAAAUUCGUCUUUGUGUUGAACUCCACCUGCCUCUCUUUUAAAUAGAACGUCACAAAUGUGACUAUUAUUCGCGUC------GCAUGGGCGACUUCC .......(((((........)))))...((((((.((((.((((.............(((.......)))..(((((....))))).....))))...)------))).))))))..... ( -20.80) >consensus AUUUGCUAUAGGC___AUUACUUGUAGUUCAUUUUAGUGUUGAACUCCGACUGACGCUCCUUAGCGUACAUAGUCA______UCAGCAUCAUGCACACCCUGCAGGAAUGCGCUAUUUCA ....(((((................((((((.........)))))).......((((......))))..)))))...........((((..((((.....))))...))))......... (-11.48 = -12.18 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:27 2006