Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,920,175 – 12,920,286 |
Length | 111 |
Max. P | 0.633476 |
Location | 12,920,175 – 12,920,286 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -19.46 |
Energy contribution | -20.52 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.21 |
Mean z-score | -1.38 |
Structure conservation index | 0.62 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12920175 111 + 22407834 UAUGUCGUCGAGAAGAUUAAAGUCGUGGGCUGCACUUAUAUGGCAGCUUGUGGACUUGAUUUUACCCUGGCUAAGUCAAAAUUUGGAAGCAGAACACA---------UGCUUCUUACUCA .........(((((((((((..(((..((((((.(......)))))))..)))..))))))))....((((...))))......(((((((.......---------)))))))..))). ( -32.80) >DroSec_CAF1 99272 111 + 1 UAUGUCGUAGAAAAGAUUAAAGUCGUGGGCUGCACUUAUAUGGCAGCUUGCGGACUUGAUUUUACCCUGGCCAAGUCCAAAUUUGGAAGCAGAACACA---------UGCUUCUUACUCA ......(((....(((((......(..((((((.(......)))))))..)(((((((.............))))))).)))))(((((((.......---------))))))))))... ( -34.02) >DroSim_CAF1 103266 110 + 1 UAUGUCGUCGAGAAGAU-AAAGUCGUGGGCUGCACUUAUAUGGCAGCUUGUGGACUUGAUUUUACCCUGGCCAAGUCAAAAUUUGGUAGCAGAACACA---------UGCUUCUUACUCA .........(((((((.-.((((((..((((((.(......)))))))..).)))))............(((((((....)))))))((((.......---------)))))))).))). ( -31.80) >DroEre_CAF1 105949 120 + 1 UAUGUGGUCGAGAAGAUCAAAGUCGUUGGCUGCACCUACAUGGCGGCUUGUGGACUUGAUUUUACCCUGGCCAAGUCAAAAUUUGGCAGCAAAGUACAGGUUACUAAUGCCUCUUUCUCA ..((.((..(((((((((((.(((...((((((.........))))))....)))))))))))..(((((((((((....))))))).((...)).))))..........)))..)).)) ( -32.40) >DroYak_CAF1 101415 120 + 1 UAUGUAGUCGAGAAGAUCAAAGUCGUGGGCUGCACUUAUAUGGCAGCUUGUGGACUUGACUACACCCUGGCUAAGUCGAAAUUUGGAAGCAAAACACAGGUUACUACUUCCUCUUUCACA ..(((((((((.....)).((((((..((((((.(......)))))))..).))))))))))))..........((.((((...(((((...(((....)))....)))))..)))))). ( -35.50) >DroAna_CAF1 120014 100 + 1 UACGUGGUUGAGAAGAUCAAGGUGGUUGGCUGCACUUACAUGGCUGCCUGUGGACUAGAUUUUAAUAUUGCCUCGUUA------GGGAGUAAAGCAAAAAUGAACA-------------- ..(((..(((..((((((.((......(((.((.(......))).)))......)).))))))..((((.(((....)------)).))))...)))..)))....-------------- ( -21.10) >consensus UAUGUCGUCGAGAAGAUCAAAGUCGUGGGCUGCACUUAUAUGGCAGCUUGUGGACUUGAUUUUACCCUGGCCAAGUCAAAAUUUGGAAGCAAAACACA_________UGCUUCUUACUCA ............((((((((..(((..((((((.(......)))))))..)))..)))))))).......((((((....)))))).................................. (-19.46 = -20.52 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:26 2006