Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,914,187 – 12,914,298 |
Length | 111 |
Max. P | 0.580182 |
Location | 12,914,187 – 12,914,298 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -34.27 |
Consensus MFE | -20.39 |
Energy contribution | -22.15 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.38 |
Mean z-score | -1.90 |
Structure conservation index | 0.60 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12914187 111 + 22407834 UCGCCAAUCAUCUGGAGUCUACUGGGGAACCAGGUUACGUUCACGUAAGUGGACGCACCCUAAGUAUGCUAAA--UCCAGCGGAUUAUACUAUAUUAAGUGGUACGCAAAAGG ..((.((((..(((((((.((((((....))(((...(((((((....)))))))...))).)))).))....--)))))..)))).((((((.....)))))).))...... ( -34.40) >DroSec_CAF1 93277 111 + 1 UCGCCAAUCAUCUGGAGUCCACUGGGAAACCAGGUUACGUUCACGUUAGUGGACGAACCCUAAGUAUGCUAAA--UCCAGCGGAUUAUACUAUAUUAAGUGGUCCGCAAAGGG ...((.......((((......(((....)))((((.(((((((....)))))))))))..............--))))(((((((((..........)))))))))...)). ( -37.90) >DroSim_CAF1 96983 111 + 1 UCGCCAAUCAUCUGGAGUCCACUGGGAAACCAGGUUACGUUCACGUUAGUGGACGAACCCUAAGUAUGCUAAA--UCCAGCGGAUUAUACUAUAUUAAGUGGUCCGGAAAGGG ..........((((((..(((((((....)).((((.(((((((....)))))))))))...((((((....(--(((...))))))))))......)))))))))))..... ( -37.90) >DroEre_CAF1 100042 111 + 1 UCGCCAAUCAUCUGGAGUCCUCUGGGAAACCAGGUUACGUACACGUGAGUGGACGAACCCUGAGUAUGCUGAA--UCCAGCGGAUUAUACCAUAUUGACUGGUACGCCCAAGG ..((((.(((..((((((((..(((....)))((((.(((.(((....))).)))))))........((((..--..)))))))))...)))...))).)))).......... ( -38.30) >DroYak_CAF1 95405 111 + 1 UCGCCAAUCAUCUGGAGUCCACUGGGAAGCCCGGUUACGUUCACGUUAGUGGACGAACGCUAAGUAUGCUGAA--UCCGUCGGAUUAUACUAUAUUAACUGGCACGCAAAAGG ..(((........((..(((....)))..)).((((((((((((....))))))).......((((((((((.--....))))..))))))....)))))))).......... ( -29.90) >DroAna_CAF1 113502 111 + 1 UUGCCAGUCAUUUGGAGUCCACUGGCGAAUCGGGCUACGUACAUGUCAGUAAUGCCACAAUGCGAAAGCUGAAAUUUCAAGGAAUUAAAGUAAA--AGCAGGAACGGCAAAAG (((((..((...(((.....(((((((...((.....))....)))))))....)))...(((....(((..(((((....)))))..)))...--.))).))..)))))... ( -27.20) >consensus UCGCCAAUCAUCUGGAGUCCACUGGGAAACCAGGUUACGUUCACGUUAGUGGACGAACCCUAAGUAUGCUAAA__UCCAGCGGAUUAUACUAUAUUAACUGGUACGCAAAAGG ..(((((((..(((((.....((((....))))....(((((((....)))))))....................)))))..))))..(((......)))))).......... (-20.39 = -22.15 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:25 2006