Locus 4504

Sequence ID 2L_DroMel_CAF1
Location 12,913,237 – 12,913,352
Length 115
Max. P 0.511504
window7084

overview

Window 4

Location 12,913,237 – 12,913,352
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 82.61
Mean single sequence MFE -27.63
Consensus MFE -18.93
Energy contribution -18.77
Covariance contribution -0.16
Combinations/Pair 1.35
Mean z-score -1.50
Structure conservation index 0.68
SVM decision value -0.04
SVM RNA-class probability 0.511504
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12913237 115 + 22407834
CUCUGCAUGAUCUACAUGUUCCUGCCAAUUCCCUCGAUCAAGGGAGCUGCCCUUUUGGCAUCCUCAGUCAGUCUUAUAUAUGUGGCAUUUUUUAUGCACUCGCUCACUUUUAACG
...(((((((.((((((((..(((.(..((((((......)))))).((((.....))))......).)))......))))))))......)))))))................. ( -25.10)
>DroSec_CAF1 92327 115 + 1
CUCUGCAUGAUCUACAUGUUCCUGCCAAUUCCCUCGAUCAAGGGAGCUGCCCUCUUGGCAUCCUCAGUCAGUCUCAUAUAUGUGGCCUUUUUCAUGCACUCGCUCACUUUCAACG
...(((((((.((((((((..(((.(..((((((......)))))).((((.....))))......).)))......))))))))......)))))))................. ( -27.30)
>DroSim_CAF1 96033 115 + 1
CUCUGCAUGAUCUACAUGUUCCUGCCAAUUCCCUCGAUCAAGGGAGCAGCCCUCUUGGCAUCCUCAGUCAGUCUUAUAUAUGUGGCCUUUUUCAUGCACUCGCUCACUUUCAACG
...(((((((.((((((((..((((....(((((......))))))))).....(((((.......)))))......))))))))......)))))))................. ( -27.30)
>DroEre_CAF1 99085 115 + 1
CUGUGCAUGAUCUACAUGUUCAUGCCAAUUCCCUCGAUCAAGGGAGCUGCCCUAUUGGCAACCUCAGUCAGCCUUAUAUAUGUGGCCUUUUUUAUGCACUCGCUCACUUUCAACG
..((((((((.((((((((....((...((((((......)))))).((((.....))))..........)).....))))))))......))))))))................ ( -28.70)
>DroYak_CAF1 94461 115 + 1
CUCUGCAUGAUCUACAUGUUCAUGCCGAUUCCCUCGAUCAAGUGGGCUGCCCUAUUGGCAUGCUCGGUCAGUCUUAUAUAUGUGGCCUUUUUCAUGCACUCGCUCACUUUCAACG
...(((((((.((((((((...((((((((.....))))....((((((((.....)))).)))))).)).......))))))))......)))))))................. ( -30.10)
>DroAna_CAF1 112557 115 + 1
CUGUGCAUGGUCUACAUGUUUCUGCCGAUAACCUCGCAUACGGUGGCACUCAUACUAGGCACGGCGGUCAGCAUAACCUAUAUAGGCUACUACGUUUUCUGCCUGCCCUUUACCG
....(((((.....)))))...((((....(((........))))))).........((((.(((((..(((.((.(((....)))....)).)))..)))))))))........ ( -27.30)
>consensus
CUCUGCAUGAUCUACAUGUUCCUGCCAAUUCCCUCGAUCAAGGGAGCUGCCCUAUUGGCAUCCUCAGUCAGUCUUAUAUAUGUGGCCUUUUUCAUGCACUCGCUCACUUUCAACG
...(((((((.((((((((....((...((((((......))))))..(((.....)))...........)).....))))))))......)))))))................. (-18.93 = -18.77 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:24 2006