Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,331,885 – 1,331,983 |
Length | 98 |
Max. P | 0.929084 |
Location | 1,331,885 – 1,331,983 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 91.03 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -20.51 |
Energy contribution | -19.82 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.15 |
Mean z-score | -1.93 |
Structure conservation index | 0.89 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1331885 98 - 22407834 CAA-GCUAUUAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCUCAGAUACAGUUUACGUUUGCAUUUC (((-((............(((......)))((((....((((.....))))(((((((((((.........)).))))).)))))))))))))...... ( -21.50) >DroSec_CAF1 89263 98 - 1 AAA-GCUAUCAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUACAGUUUACGUUUGCAUUUC ...-.....(((((....(((......)))((((....((((.....))))((((((((((.(........).)))))).)))))))))))))...... ( -22.90) >DroSim_CAF1 92772 98 - 1 CAA-GCUAUUAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUACAGUUUACGUUUGCAUUUC (((-((............(((......)))((((....((((.....))))((((((((((.(........).)))))).)))))))))))))...... ( -22.80) >DroYak_CAF1 92813 96 - 1 ---UUCAAUUAAACUCCUGGCUGCAUUGCCAUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUGCAGUCUACGUUUGCAUUUC ---......(((((....(((((((((((((.((((..((((.....))))...))))))))..............)))))))))...)))))...... ( -24.73) >consensus CAA_GCUAUUAAACUCCAGACUGAAACGUCGUAAUUUACGGCCUAAUGCCGACUGAUUUGGCCAUCUCUAAGCCCAGAUACAGUUUACGUUUGCAUUUC .........(((((....(((......)))(((......(((.....)))(((((((((((.(........).)))))).)))))))))))))...... (-20.51 = -19.82 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:31 2006