Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 195,506 – 195,616 |
Length | 110 |
Max. P | 0.630971 |
Location | 195,506 – 195,616 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -45.28 |
Consensus MFE | -29.69 |
Energy contribution | -28.87 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.47 |
Mean z-score | -1.51 |
Structure conservation index | 0.66 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 195506 110 - 22407834 GCAUUUAAAUGCACGUUCUUGUGC------GGCGGAAGGCUCCCCAAGGGUGGCGAGCUGGCCACUUGCGAUUGGGUUGCCUGUUGAGGCUGUACGGUGACCACUUUACUUAUGAU ((((....))))..(((.((((((------(((...((((..((((((((((((......)))))))....)))))..))))......))))))))).)))............... ( -40.40) >DroVir_CAF1 11008 110 - 1 GCGUUUACAUGCAGAUUCUUGUGC------GGCGGCAGACUGCCCAUAGGCGGCGAGCUGGCCACCUGGGUUUGUAUCGCCUGCUGUGGCUGCACGGUAACCACCUUGCUAAUGAU .((((.....((((......((((------(((.((((...(((....)))(((((((..(((.....)))..)).)))))..)))).)))))))(((....))))))).)))).. ( -43.50) >DroPse_CAF1 12569 116 - 1 GCAUUCACGUGGAGGCUCUUGUGCCCAAGAGGCGGCAGGCUGCCUAAAGGCGGGGAGCUUGCCACCUGCGAUUGGGUGGCCUGCUGCGGCUGCACUGUCACCACCUUGCUGAUGAU (((.....((((.(((....((((...((..(((((((((..(((((..(((((..(....)..)))))..)))))..)))))))))..)))))).))).))))..)))....... ( -57.40) >DroSec_CAF1 11589 110 - 1 GCAUUGACAUGAACGUUCUUAUGC------GGCGGAAGGCUGCCCAAGGGAGGCGAGCUAGCCAUCUGCGAUUGGGUUGCCUGUUGUGGCUGUACGGUAACCACUUUACUUAUGAU .......(((((.(((.(....((------.((((.((((.((((((.((((((......))).)))....)))))).)))).)))).)).).)))((((.....))))))))).. ( -36.10) >DroMoj_CAF1 10898 110 - 1 GCAUUCACAUGCAAAUUCUUAUGC------GGCGGCAGGCUACCCAUGGGCGGCGAGCUGGCCACUUGUGUCUGUAUCGCCUGCUGUGGCUGCACGGUGACAACCUUGCUAAUGAU ((((....))))..........((------.((((((((((((.((..((.(((......))).))..))...)))..))))))))).)).(((.(((....))).)))....... ( -43.10) >DroAna_CAF1 10703 110 - 1 CCGCUGACGUGCAGAUUCUUGUGC------GGCGGCAGGCUGCCCAAAGGCGGCGAGCUGGCCACCUGCGACUGGGUCGCCUGCUGCGGCUGCACCGUCACCACCUUGCUGAUGAU ..(.(((((((((.........((------.(((((((((.(((((.(((.(((......))).))).....))))).))))))))).)))))).))))).).............. ( -51.20) >consensus GCAUUCACAUGCAGAUUCUUGUGC______GGCGGCAGGCUGCCCAAAGGCGGCGAGCUGGCCACCUGCGAUUGGGUCGCCUGCUGUGGCUGCACGGUAACCACCUUGCUAAUGAU ((((....((....))....)))).......(((((((((.(((((.(((.(((......))).))).....))))).)))))))))....(((.(((....))).)))....... (-29.69 = -28.87 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:03 2006