Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,890,278 – 12,890,372 |
Length | 94 |
Max. P | 0.976405 |
Location | 12,890,278 – 12,890,372 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -24.69 |
Consensus MFE | -15.01 |
Energy contribution | -15.03 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.61 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12890278 94 + 22407834 GGCGGGUGG------AUAUGGAUGUGGAUAUGGAAGGCACCAUAAGCAGUUGGAAAAUUUAUGACCAAGGGCAAUGGCAAAUGGCCAUGUGAAUGAGUCC (((..((..------((((((.(((.(.(((((......))))).((..((((...........))))..))..).))).....))))))..))..))). ( -20.90) >DroPse_CAF1 81819 84 + 1 GCC---UGG------ACUGAG----AGAUGUCGAAAGACCCAUAAGCAGUUGGAAAAUUUAUGGCCAAGGGCAUUGGCAAAUGGCCAUGUGAAUGGG--- .((---(.(------((((..----....(((....))).......))))).)......((((((((...((....))...)))))))).....)).--- ( -26.12) >DroSec_CAF1 69346 94 + 1 GGCGGUUGG------AUAUGGAUGUGGAUGUGGAAGGCACCAUAAGCAGUUGGAAAAUUUAUGGCCAAGGGCAAUGGCAAAUGGCCAUGUGAAUGAGUCC (((..((.(------((.((..(((((.(((.....))))))))..))))).)).....((((((((...((....))...)))))))).......))). ( -23.80) >DroEre_CAF1 74919 100 + 1 GGCGGGUGGAUAAGGAUGUGGAUGUGGAUGUGGAAGGCGCCAUAAGCAGUUGGAAAAUUUAUGGCCAAGGGCAAUGGCAAAUGGCCAUGUGAAUGAGCCC ...((((..((.....(((...(((((.(((.....)))))))).)))...........((((((((...((....))...))))))))...))..)))) ( -26.80) >DroAna_CAF1 92185 75 + 1 CGCGGG-------------------------GCAAAGAGCCAUAAGCAGUUGGAAAAUUUAUGGCUAAGGGCAAUGGCAAAUGGCCAUGUGAAUGGGCCC ....((-------------------------((....((((((((...(((....)))))))))))....(((.((((.....)))))))......)))) ( -24.40) >DroPer_CAF1 101654 84 + 1 GCC---UGG------ACUGAG----AGAUGUCGAAAGACCCAUAAGCAGUUGGAAAAUUUAUGGCCAAGGGCAUUGGCAAAUGGCCAUGUGAAUGGG--- .((---(.(------((((..----....(((....))).......))))).)......((((((((...((....))...)))))))).....)).--- ( -26.12) >consensus GGCGGGUGG______AUAUGG____GGAUGUGGAAAGAACCAUAAGCAGUUGGAAAAUUUAUGGCCAAGGGCAAUGGCAAAUGGCCAUGUGAAUGAG_CC .......................................(((........)))......((((((((...((....))...))))))))........... (-15.01 = -15.03 + 0.03)
Location | 12,890,278 – 12,890,372 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -18.66 |
Consensus MFE | -11.99 |
Energy contribution | -12.02 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -2.49 |
Structure conservation index | 0.64 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12890278 94 - 22407834 GGACUCAUUCACAUGGCCAUUUGCCAUUGCCCUUGGUCAUAAAUUUUCCAACUGCUUAUGGUGCCUUCCAUAUCCACAUCCAUAU------CCACCCGCC (((.........(((((((...((....))...)))))))............((..(((((......)))))..))..)))....------......... ( -18.10) >DroPse_CAF1 81819 84 - 1 ---CCCAUUCACAUGGCCAUUUGCCAAUGCCCUUGGCCAUAAAUUUUCCAACUGCUUAUGGGUCUUUCGACAUCU----CUCAGU------CCA---GGC ---.((......(((((((...((....))...)))))))..........((((.......(((....)))....----..))))------...---)). ( -18.22) >DroSec_CAF1 69346 94 - 1 GGACUCAUUCACAUGGCCAUUUGCCAUUGCCCUUGGCCAUAAAUUUUCCAACUGCUUAUGGUGCCUUCCACAUCCACAUCCAUAU------CCAACCGCC ((..........(((((((...((....))...)))))))............((..(((((((.............)).))))).------.)).))... ( -18.72) >DroEre_CAF1 74919 100 - 1 GGGCUCAUUCACAUGGCCAUUUGCCAUUGCCCUUGGCCAUAAAUUUUCCAACUGCUUAUGGCGCCUUCCACAUCCACAUCCACAUCCUUAUCCACCCGCC ((((........(((((((...((....))...))))))).............((.....)))))).................................. ( -19.00) >DroAna_CAF1 92185 75 - 1 GGGCCCAUUCACAUGGCCAUUUGCCAUUGCCCUUAGCCAUAAAUUUUCCAACUGCUUAUGGCUCUUUGC-------------------------CCCGCG ((((........(((((.....))))).......((((((((.............))))))))....))-------------------------)).... ( -19.72) >DroPer_CAF1 101654 84 - 1 ---CCCAUUCACAUGGCCAUUUGCCAAUGCCCUUGGCCAUAAAUUUUCCAACUGCUUAUGGGUCUUUCGACAUCU----CUCAGU------CCA---GGC ---.((......(((((((...((....))...)))))))..........((((.......(((....)))....----..))))------...---)). ( -18.22) >consensus GG_CCCAUUCACAUGGCCAUUUGCCAUUGCCCUUGGCCAUAAAUUUUCCAACUGCUUAUGGCGCCUUCCACAUCC____CCAAAU______CCACCCGCC ............(((((((...((....))...))))))).......(((........)))....................................... (-11.99 = -12.02 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:14 2006