Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,878,741 – 12,878,837 |
Length | 96 |
Max. P | 0.912427 |
Location | 12,878,741 – 12,878,837 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.22 |
Mean single sequence MFE | -22.26 |
Consensus MFE | -17.64 |
Energy contribution | -19.90 |
Covariance contribution | 2.26 |
Combinations/Pair | 1.14 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12878741 96 + 22407834 UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG--AAGAGUGGAAGCAAUUUUGCUGCAAUUAUGGAAUUGGGAAAACAUUGUCC .(((((((((........((((((.......))))))..(((((((--...(((...((((....))))...))).))))))))))))))))...... ( -21.80) >DroSec_CAF1 57819 89 + 1 UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUGAGAAGAGUGGAAGCAAUUU---------UAUGGAAUUGGGAAAACAUUGUCC .(((((((((........((((((.......))))))..((((((...((((.((....)).)))---------)..)))))))))))))))...... ( -19.90) >DroSim_CAF1 60709 96 + 1 UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG--AAGAGUGGAAGCAAUUUUGCUGCAAUUAUGGAAUUGGGAAAACAUUGUCC .(((((((((........((((((.......))))))..(((((((--...(((...((((....))))...))).))))))))))))))))...... ( -21.80) >DroEre_CAF1 63858 96 + 1 UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG--AGGAGUGAAAGCAAUUUCGCUGCAAUUAUGGGAUUGGGAAAACAUUGUCC .((((((((((....((.((((((.......)))))).........--.(.(((((((....))))))).).....))....))))))))))...... ( -25.10) >DroYak_CAF1 59956 96 + 1 UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGCUCUG--AAGAGCGAAAGCAAUUUUGCUGCAAUUGAUGAAUAGGGAAAACAUUGUCC .(((((((((........((((((.......))))))..(((...(--((..((....))..))).)))..............)))))))))...... ( -22.70) >consensus UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG__AAGAGUGGAAGCAAUUUUGCUGCAAUUAUGGAAUUGGGAAAACAUUGUCC .(((((((((........((((((.......))))))..((((((......(((((((....)))))))........)))))))))))))))...... (-17.64 = -19.90 + 2.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:08 2006