Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,873,890 – 12,873,993 |
Length | 103 |
Max. P | 0.637172 |
Location | 12,873,890 – 12,873,993 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -27.97 |
Consensus MFE | -19.02 |
Energy contribution | -20.90 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.02 |
Structure conservation index | 0.68 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12873890 103 + 22407834 CAAGUA--CAACAAUUGUGUUGACAGGCGCGGCAAUGCGACGCUGCCAACAAACAAACCGCGCUACAAACCGCGCAACAAAAAUGCCGCAACAAUGGCG--UGGCCA- ...((.--(((((....))))))).((((((((........))))).............((((........)))).......((((((......)))))--).))).- ( -30.40) >DroGri_CAF1 73145 104 + 1 UUUGCUAACAACGAUUGUGUUGACAGCAGCGGGAAUGCGUUGCAACCAACAAACAAACCGCGCAACAAGGC-CGCAACAAAACAGGCGGAACAAUGGCGACUGC---G ..((((..(((((....)))))..))))((((......((((....))))..........(((.......(-(((..........)))).......))).))))---. ( -26.04) >DroSec_CAF1 53049 103 + 1 CAAGUA--CAACAAUUGUGUUGACAGGCGCGGCAAUGCGACGCUGCCAACAAACAAACCGCGCUACAAACCGCGCAACAAAAAUGCCGCAACAAUGGCC--UGGCCA- ......--(((((....))))).(((((((((((..(((....))).............((((........))))........)))))).......)))--))....- ( -29.81) >DroSim_CAF1 55810 103 + 1 CAAGUA--CAACAAUUGUGUUGACAGGCGCGGCAAUGCGACGCUACCAACAAACAAACCGCGCUACAAACCGCGCAACAAAAAUGCCGCAACAAUGGCC--UGGCCC- ......--(((((....))))).(((((((((((..((...))................((((........))))........)))))).......)))--))....- ( -28.21) >DroEre_CAF1 59044 103 + 1 CAAGUA--CAACAAUUGUGUUGACAGGCGCGGCAAUGCGACGCUGCCAACAAACAAACCGCGCUACAAACCACGCAACAAAAAUGCCGCAACAAUGGCU--UGGCCA- ...((.--(((((....))))))).(((((((((..(((....))).............(((..........)))........))))))..(((....)--))))).- ( -25.40) >consensus CAAGUA__CAACAAUUGUGUUGACAGGCGCGGCAAUGCGACGCUGCCAACAAACAAACCGCGCUACAAACCGCGCAACAAAAAUGCCGCAACAAUGGCC__UGGCCA_ .................(((((...((((((((........))))).............((((........)))).........))).)))))..(((.....))).. (-19.02 = -20.90 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:07 2006