Locus 4492

Sequence ID 2L_DroMel_CAF1
Location 12,872,328 – 12,872,443
Length 115
Max. P 0.997742
window7065

overview

Window 5

Location 12,872,328 – 12,872,443
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 89.83
Mean single sequence MFE -40.02
Consensus MFE -34.64
Energy contribution -35.64
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -2.42
Structure conservation index 0.87
SVM decision value 2.92
SVM RNA-class probability 0.997742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12872328 115 - 22407834
GUAACGCCUGCUGAUGGUGACAUCAUCAUUAUGGCGUUAGGAAACUAGUUUGCCAAGGUGUGAGCAACUACGCCUCCUUCGAAAUUCCUGCACUUGGCGUUUCGGUGUCUUCGAA
..((((((((((((((....)))))((....(((((((((....))))..)))))(((((((......))))))).....)).......)))...))))))((((.....)))). ( -39.10)
>DroSec_CAF1 51483 115 - 1
GUGACGCCUGCUGAUGGUGACAUCAUCAUUAUGGCGUUAGGAAACUAGUUUGUCAAGGUGUGGGCAACUACGCCUCCUUCGAAAUUCCUGCACUUGGCGUUUCCGUGUCUUCGAA
.(((((((((.(((((....))))).))....)))))))((((((...((((...((((((((....))))))))....))))......((.....))))))))........... ( -43.20)
>DroSim_CAF1 54075 115 - 1
GUGACGCCUGCUGAUGGUGACAUCAUCAUUAUGGCGUUAGGAAACUAGUUUGCCAAGGUGUGGGCAACUACGCCUCCUUCGAAAUUCCUGCACUUGGCGUUUCCGUGUCUUCGAA
..(((((.((.(((((....))))).))...(((((((((....))))..)))))((((((((....)))))))).....(((((.((.......)).))))).)))))...... ( -43.70)
>DroEre_CAF1 57413 115 - 1
GUGACGUCUGCUGAUGGUGACAUCAUCAUUAUGGCGUUAGGAAACUAGUUUGCCAAGGUGUGGGCAGCUCCGCCUCCUUCGAAAUUCCUGCACUUGGCGUUUUGCUAUCGAUGAC
....((((((.(((((....))))).))..((((((((((....))))...((((((.((..((.(..((..........))..).))..))))))))....)))))).)))).. ( -37.00)
>DroYak_CAF1 53571 104 - 1
GUGACGUCUGCUGAUGGUGACAUCAUCAUUAUGGCGUUAGGAAACUAGUUUGCCAAGGUGUGGGCAUCUCCGCCUCCUGCGAAAUUCCUGCACUUGUCA--------UC---AAA
(((((...((.(((((....))))).))...(((((((((....))))..)))))(((((..((.((...(((.....)))..)).))..)))))))))--------).---... ( -37.10)
>consensus
GUGACGCCUGCUGAUGGUGACAUCAUCAUUAUGGCGUUAGGAAACUAGUUUGCCAAGGUGUGGGCAACUACGCCUCCUUCGAAAUUCCUGCACUUGGCGUUUCCGUGUCUUCGAA
..((((((((((((((....)))))((....(((((((((....))))..)))))((((((((....)))))))).....)).......)))...)))))).............. (-34.64 = -35.64 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:06 2006