Locus 4491

Sequence ID 2L_DroMel_CAF1
Location 12,871,523 – 12,871,626
Length 103
Max. P 0.765018
window7064

overview

Window 4

Location 12,871,523 – 12,871,626
Length 103
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 93.70
Mean single sequence MFE -37.10
Consensus MFE -30.88
Energy contribution -31.10
Covariance contribution 0.22
Combinations/Pair 1.06
Mean z-score -2.07
Structure conservation index 0.83
SVM decision value 0.51
SVM RNA-class probability 0.765018
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12871523 103 + 22407834
GUGCCACAUGUGGGCAGGAUUGCAGGAGCAAAGGCUCCUUU-GGCCAAG-CAGAAGGACUGCAAAUUUUUGCGCACGACCGAAGCAAACGGAGCUACCAAGUGGA
...((((.((((.((((((((((((..((....))((((((-.((...)-).))))))))))))..)))))).)))).(((.......))).........)))). ( -35.90)
>DroSec_CAF1 50603 103 + 1
GUGCCACAUGUGGGCAGGAUUGCAGGAGCGAGGGCUCCUUU-GGCCAAG-CAGAAGGACUGCAAAUUUUUGCGCACGACCGAAGCAAACGGAGCUACCAAGUGGA
...((((.((((.((((((((((((..((....))((((((-.((...)-).))))))))))))..)))))).)))).(((.......))).........)))). ( -36.10)
>DroSim_CAF1 53195 103 + 1
GUGCCACAUGUGGGCAGGAUUGCAGGAGCGAGGGCUCCUUU-GGCCAAG-CAGAAGGACUGCAAAUUUUUGCGCACGACCGAAGAAAACGGAGCUACCAAGUGGA
...((((.((((.((((((((((((..((....))((((((-.((...)-).))))))))))))..)))))).)))).(((.......))).........)))). ( -36.10)
>DroEre_CAF1 56614 103 + 1
GGGCCACAUGUGGGCAGGAUUGCAGAGGCGAAGGCUCCUUU-GGCCAAG-CAGAAGGACUGCAAAUUUUUGCGCACGACCGAAGCAAACGGAGCUACCAAGUGGA
...((((.((((.((((((((((((..((....))((((((-.((...)-).))))))))))))..)))))).)))).(((.......))).........)))). ( -38.20)
>DroYak_CAF1 52811 103 + 1
GUGCCACAUGUGGGCAGGAUUGCAGGAGCGAAGGCUCCUUU-GGCCAAG-CAGAAGGACUGCAAAUUUUUGCGCACGACCGAAGCAAACGGAGCUUCCAAGUGGA
...((((.((((.((((((((((((..((....))((((((-.((...)-).))))))))))))..)))))).))))...(((((.......)))))...)))). ( -41.60)
>DroAna_CAF1 73636 105 + 1
GAGCCACAUGUGGGCAGGAUUGCCGGAGGAAAGGUUCUUUUCGGCGAAGACCGAAGGACUGCAAAUUUUUGCGCACGAGCGAAGCAAACGAAGCUUCCAAGUGGA
...((((.((((.((((((((((((((((........))))))))))....(....).........)))))).)))).(.(((((.......))))))..)))). ( -34.70)
>consensus
GUGCCACAUGUGGGCAGGAUUGCAGGAGCGAAGGCUCCUUU_GGCCAAG_CAGAAGGACUGCAAAUUUUUGCGCACGACCGAAGCAAACGGAGCUACCAAGUGGA
...((((.((((.((((((((((((..((....))((((((.(.......).))))))))))))..)))))).)))).(((.......))).........)))). (-30.88 = -31.10 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:05 2006