Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,842,781 – 12,842,872 |
Length | 91 |
Max. P | 0.848034 |
Location | 12,842,781 – 12,842,872 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -10.32 |
Energy contribution | -14.56 |
Covariance contribution | 4.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.19 |
Structure conservation index | 0.43 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12842781 91 - 22407834 UAUAGCCCGUUUAGAAUGUGUGCUAAAAGAGUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU ..((((((((.....))).).))))........((((((.(((((...((.(((.......))).)).))))).))))))........... ( -26.10) >DroSec_CAF1 23638 91 - 1 UAUAGCCCGCUUCGAAUGGGUGCUAAAAGAUUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU ..((((((.(.......))).))))........((((((.(((((...((.(((.......))).)).))))).))))))........... ( -28.00) >DroSim_CAF1 25996 91 - 1 UAUAGCACGCUUGAAAUGGGUGCUAAAAGAUUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU ..((((((.(.......).))))))........((((((.(((((...((.(((.......))).)).))))).))))))........... ( -31.70) >DroEre_CAF1 29155 73 - 1 UUCAGCCCGCUGCCAAUGGGUGCUAAAG-AGUCGGCUUUGAAAGGAUAGAGAGCUU-----------------UAGGGCCAAAAAUAAAAU ....((((((.(((....)))))...((-(((...(((((......))))).))))-----------------).))))............ ( -16.50) >DroYak_CAF1 24538 74 - 1 UUUAGCUCGCCUCCAAUGGGUGCUAAAGAAGUCGGCUUUGAAAGGAUAGAGACCUU-----------------GAGGGGCAAAAAUAAAAU ((((((.(.((......))).)))))).......(((((..((((.......))))-----------------..)))))........... ( -17.60) >consensus UAUAGCCCGCUUCCAAUGGGUGCUAAAAGAGUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU ..((((.(.(.......).).))))........((((((.(((((...((.(((.......))).)).))))).))))))........... (-10.32 = -14.56 + 4.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:53 2006