| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,840,279 – 12,840,377 |
| Length | 98 |
| Max. P | 0.938910 |
| Location | 12,840,279 – 12,840,377 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.73 |
| Mean single sequence MFE | -32.22 |
| Consensus MFE | -19.61 |
| Energy contribution | -22.73 |
| Covariance contribution | 3.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12840279 98 + 22407834 CGUGUCUAUCCAGGUCUCUCCCAGAUUUCCAGCUGAAGCCCACUCGUCAUC-----------------GGCAUCGUGGCAGUGGGCGUUCGCUGGCAUUCCACGCUCAUGUGAUC ((((........((......)).((...(((((.((((((((((.((((.(-----------------(....))))))))))))).))))))))...))))))........... ( -33.90) >DroPse_CAF1 27342 110 + 1 U--CCCUCCCCCGCCCCCUGCCUCACCCCCUGCUCUAGCCCACUCAUCCUGGAUGCUGGAUGAUCAUCCACAUCGU---UGUGGGCGUCUUUCGGCAUUCCAUGUUCAUGUGAUC .--...................((((.....((....))..........(((((((((((.(((..((((((....---)))))).))).))))))).)))).......)))).. ( -26.20) >DroSec_CAF1 21069 98 + 1 CGUGUCUAUCCUGGUCUCUCCUAGAUUUCCAGCUGAAGCCCACUCGUCAGC-----------------AGCAUCGUGGCAGUGGGCGUCCGCUGGCAUUUCUCGUUCAUGUGAUC ((((........((.....)).(((..((((((.((.(((((((.((((.(-----------------......)))))))))))).)).))))).)..)))....))))..... ( -31.40) >DroSim_CAF1 23314 98 + 1 CGUGUCUAUCCUGGUCUAUCCCAGAUUUCCAGCUGAGGCCCACUCGUCAUC-----------------AGCAUCGUGGCAGUGGGCGUCCGCUGGCAUUCCUCGUUCAUGUGAUC ((((......((((......))))....(((((.((.(((((((.(((((.-----------------......)))))))))))).)).)))))...........))))..... ( -36.90) >DroEre_CAF1 26803 87 + 1 CGUGUCUAUCCUGGUCUCUCCCAGAUCUCCAGCCGAAGCCCA----------------------------CAUCUUGGUAGUGGGCGUCCGCUGGCAUUCCUCCUUCCUGUGAUC ...(((....((((......))))....(((((.((.(((((----------------------------(((....)).)))))).)).)))))................))). ( -27.10) >DroYak_CAF1 21813 107 + 1 CGUGUCUAUCCUGGUCUCUCCCAGGUUUCCAGCUGAAGCCCACUCGUCAUC--------AGCAUCAUCAGCAUCGUGGCAGUGGGCGUCCGCUGGCAUUCCUCGUUCCUGUGAUC ...(((...(((((......)))))...(((((.((.(((((((.(((((.--------.((.......))...)))))))))))).)).)))))................))). ( -37.80) >consensus CGUGUCUAUCCUGGUCUCUCCCAGAUUUCCAGCUGAAGCCCACUCGUCAUC_________________AGCAUCGUGGCAGUGGGCGUCCGCUGGCAUUCCUCGUUCAUGUGAUC ..........((((......))))....(((((.((.(((((((.(((((........................)))))))))))).)).))))).................... (-19.61 = -22.73 + 3.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:50 2006