| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,836,920 – 12,837,013 |
| Length | 93 |
| Max. P | 0.804496 |
| Location | 12,836,920 – 12,837,013 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 84.01 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -21.52 |
| Energy contribution | -22.30 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12836920 93 + 22407834 UUUUGCUCAGAGGUUUUGUUUGGAUUUUCGUGCAUUCGCUUGCGGAAUUUUCGUGCUGUUGACUCGGCAACGCAUAUGAAUGUC--U-----GUCCCUCU-------- ........(((((...............((.(((((((..((((((....)).(((((......))))).))))..))))))).--)-----)..)))))-------- ( -22.53) >DroSec_CAF1 17692 95 + 1 UUUUUCUCAGAGGUUUUGUUUGGAUUUUCGUGCAUUCACUUGCGGAAUUUUCGUGCUGUUGACUCGGCAACGCAUAUGAAUGUAUGU-----GUCCCUCU-------- ........(((((.........(((...((((((((((..((((((....)).(((((......))))).))))..)))))))))).-----))))))))-------- ( -29.70) >DroEre_CAF1 23629 92 + 1 -UUUGCUUAGAGGUUUUGUUUGGCUUUUCGUGCAUUCACUUGCGGAAUUUUCGUGCUGUUGACUCGGCAACGCAUAUGAAUGUAUGU-------CCCCGC-------- -...((..(((((((......)))))))((((((((((..((((((....)).(((((......))))).))))..)))))))))).-------....))-------- ( -26.80) >DroWil_CAF1 23196 104 + 1 -UUUGUUCUGAG---CUGUUUGGAUUUUCGUGCAUUCACUUGCGGAAUUUUUGUGCUGUUGACUCGGCAAGGCAUAUGAAUGUAUGUAGUAUGUCCUGUACGAAUAUC -..(((((.(.(---(.....((((...((((((((((..(((..........(((((......)))))..)))..))))))))))......)))).)).)))))).. ( -26.10) >DroYak_CAF1 18451 92 + 1 -UUUGCUCAGAGGUUUUAUUUGGAUUUUCGUGCAUUCACUUGCGGAAUUUUCGUGCUGUUGACUCGGCAACGCAUAUGAAUGUAUGU-------CCCCUC-------- -........((((........(((....((((((((((..((((((....)).(((((......))))).))))..)))))))))))-------))))))-------- ( -27.90) >DroAna_CAF1 42618 94 + 1 -UUUUCUUAGCUGUUUUGUUUGGAUUUUCGUGCAUUCACUUGCGGAAUUUUCGUGCUGUUGACUCGGCAACGCAUAUGAAUGUACAU-----CUCCCGGA-------- -...(((.(((......))).))).....(((((((((..((((((....)).(((((......))))).))))..)))))))))..-----........-------- ( -27.20) >consensus _UUUGCUCAGAGGUUUUGUUUGGAUUUUCGUGCAUUCACUUGCGGAAUUUUCGUGCUGUUGACUCGGCAACGCAUAUGAAUGUAUGU_____GUCCCCCA________ .....................(((....((((((((((..((((((....)).(((((......))))).))))..)))))))))).......)))............ (-21.52 = -22.30 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:49 2006