Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,836,066 – 12,836,161 |
Length | 95 |
Max. P | 0.996584 |
Location | 12,836,066 – 12,836,161 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 94.53 |
Mean single sequence MFE | -26.94 |
Consensus MFE | -25.80 |
Energy contribution | -26.04 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.75 |
Structure conservation index | 0.96 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12836066 95 + 22407834 UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUGCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCUCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).(((((((...((((((((....))))))))....((((.....))))..))))))).........))) ( -26.20) >DroSec_CAF1 16843 95 + 1 UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUGCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).(((((((...((((((((....))))))))....((((.....))))..))))))).........))) ( -29.20) >DroSim_CAF1 18942 95 + 1 UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUUCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).((((.((...((((((((....))))))))....((((.....))))..)).)))).........))) ( -22.60) >DroEre_CAF1 22820 95 + 1 UAGCAAUCUAAUCAGGAACGCUUCCCGAAGUGCCCCCGCUCCGAUAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA .(((..(((.....)))..))).....(((((((...(((((((......)))))))....((((.....))))..)))))))............ ( -28.30) >DroYak_CAF1 17575 95 + 1 UAGCAAUCUAAUCGUGAACGCUUCCCAAAGUGCCACAGCUCCAAAUUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA .(((..((.......))..))).....(((((((...((((((((....))))))))....((((.....))))..)))))))............ ( -28.40) >consensus UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUGCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).(((((((...((((((((....))))))))....((((.....))))..))))))).........))) (-25.80 = -26.04 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:48 2006