Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,329,367 – 1,329,468 |
Length | 101 |
Max. P | 0.705022 |
Location | 1,329,367 – 1,329,468 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.13 |
Mean single sequence MFE | -30.63 |
Consensus MFE | -19.28 |
Energy contribution | -19.87 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.32 |
Mean z-score | -1.72 |
Structure conservation index | 0.63 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1329367 101 - 22407834 GUUCCAGUCGAGUCUCGGCUGGAACUUGAGCUCCGUCGGAGUAUAGGUCUUGCCCUCCUCUAUGUCAAUGGUGUUGUCGUACUUGAUCUAGUGAUUCAAUU ((((((((((.....))))))))))(((((((((...))))).((((((.(((.(..(.((((....)))).)..)..)))...)))))).....)))).. ( -32.10) >DroVir_CAF1 133694 94 - 1 AUUCCACUCGAGCCUGGGCUGGAAUUUCAAUUCAGUGGGGGUGUACGUCUUACCCUCCUCAAUUUCCAUUCCGUUCUCAAAACGCAUCUA------AAGU- .........(((..(((..(((((.....(((.((.(((((((.......))))))))).))))))))..)))..)))............------....- ( -23.70) >DroPse_CAF1 121772 95 - 1 AUUCCAGUCGAGUUUCGGCUGGAACUUCAGCUCUUUGGGGGUAUACGUCUUGCCCUCCUCAAUGUCGAUGGCGUUGUCGAAUUUCACCUG------CAAUU .(((((((((.....))))))))).....((.....(((((((.......)))))((..((((((.....))))))..))......)).)------).... ( -31.00) >DroSim_CAF1 90246 100 - 1 GUUCCAGUCGAGUCUCGGCUGGAACUUGAGCUCCGUCGGAGUAUAGGUCUUGCCCUCCUCGAUGUCAAUGGUGUUGUCGUACUUGAUCUAGUGAU-CAAUU ((((((((((.....))))))))))(((((((((...))))).((((((..(....(..(((..(.....)..)))..)..)..))))))....)-))).. ( -32.20) >DroEre_CAF1 99814 100 - 1 AUUCCAGUCGAGUCGCGGCUGGAACUUCAGCUCCGUGGGAGUAUAGGUCUUGCCCUCCUCGAUAUCAAAGGUGUUGUCGUACUUGACCUAGUGAU-CAAAU .(((((((((.....)))))))))..((((((((...))))).((((((..(....(..((((((.....))))))..)..)..)))))).))).-..... ( -31.70) >DroYak_CAF1 90212 100 - 1 AUUCCAGUCGAGUCUCGGCUGGAACUUGAGCUCCGUGGGAGUAUAGGUCUUGCCCUCCUCUAUAUCGAAGGUGUUGUCGUACUUGAUCUAGUGAG-GAAAU ..((((((((.....))))))))(((((.(((((...))))).))))).....((((..(((.((((..((((......)))))))).))).)))-).... ( -33.10) >consensus AUUCCAGUCGAGUCUCGGCUGGAACUUCAGCUCCGUGGGAGUAUAGGUCUUGCCCUCCUCAAUGUCAAUGGUGUUGUCGUACUUGAUCUAGUGAU_CAAUU .(((((((((.....))))))))).....((((.....)))).((((((..........((((((.....))))))........))))))........... (-19.28 = -19.87 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:28 2006