Locus 4477

Sequence ID 2L_DroMel_CAF1
Location 12,830,862 – 12,830,955
Length 93
Max. P 0.516305
window7042

overview

Window 2

Location 12,830,862 – 12,830,955
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 80.86
Mean single sequence MFE -19.58
Consensus MFE -13.98
Energy contribution -14.27
Covariance contribution 0.28
Combinations/Pair 1.30
Mean z-score -1.17
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.516305
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12830862 93 - 22407834
UGAAAAAUAUUUCCAACUGUGCUGGCGGGAUUAAGGGAGGUUACCCGUUUAUUACUCGACAAGCCUUCAAAAUCUCAAGCACCACAAUACAAC
..................(((((...((((((...(((((((...((.........))...)))))))..)))))).)))))........... ( -20.50)
>DroVir_CAF1 11775 79 - 1
UGAAAAAUAUUUCCAACUGUGCG--C-GGAUUA--GGAGGCUG--CGUUUAUUACCAGACAAGUGUUGAAG--CCAAAGCCUUGCAAC-----
................(((....--)-))....--.((((((.--.((((..(((.......)))...)))--)...)))))).....----- ( -13.00)
>DroPse_CAF1 13972 84 - 1
NNNNNNAUAUUUCCAACUGUGCGGCCGGGGAUUAGGGAGGCUAUCCGUUUAUUACUCGACAAGCCUUCAAAAUCUCAAGCACCA---------
..................((((.....((((((..(((((((...((.........))...)))))))..))))))..))))..--------- ( -22.50)
>DroEre_CAF1 17466 93 - 1
UGAAAAAUAUUUCCAACUGUGCUGGCGGGAUUAAGGGAGGUUACCCGUUUAUUACUCGACAAGCCUUCAAAAUCUCGAGCACCACAAUACAGC
..................(((((..(((((((...(((((((...((.........))...)))))))..))))))))))))........... ( -21.90)
>DroYak_CAF1 12012 93 - 1
UGAAAAAUAUUUCCAACUGUGCUGGCGGGAUUAAGGGAGGUUACCCGUUUAUUACUCGACAAGCCUUCAAAAUCUCAAGCACCACAAUACAAC
..................(((((...((((((...(((((((...((.........))...)))))))..)))))).)))))........... ( -20.50)
>DroAna_CAF1 37388 92 - 1
UGAAAAAUAUUUCCAACUGUGCAACCGGGAUUAAGGGAGGUUACCCGUUUAUUACUCGACAAGCCUUCAAAAUCUCAAGCAC-ACAAUACACC
.................(((((....((((((...(((((((...((.........))...)))))))..))))))..))))-)......... ( -19.10)
>consensus
UGAAAAAUAUUUCCAACUGUGCUGGCGGGAUUAAGGGAGGUUACCCGUUUAUUACUCGACAAGCCUUCAAAAUCUCAAGCACCACAAUACA_C
..................((((....((((((...(((((((....(((........))).)))))))..))))))..))))........... (-13.98 = -14.27 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:44 2006