Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,825,558 – 12,825,651 |
Length | 93 |
Max. P | 0.663454 |
Location | 12,825,558 – 12,825,651 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 85.36 |
Mean single sequence MFE | -23.15 |
Consensus MFE | -18.99 |
Energy contribution | -18.68 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.21 |
Mean z-score | -1.83 |
Structure conservation index | 0.82 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12825558 93 + 22407834 AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAACGGAAGUUGGCAAGAAAAAAAAAAAAAAAACGCUGAUCGGUAGCAAACGAUCAACAGU ....((((((.....(....).....))))))((((....))))......................(.((((((........)))))).)... ( -23.50) >DroSec_CAF1 6543 84 + 1 AACUCGGCCACUAUGCAAAUGACUUCUGGCCGCAACGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGUAGCGAAUGAUCAACAGU ....((((((.....(....).....))))))((((....))))........---------.....(.((((((........)))))).)... ( -21.00) >DroSim_CAF1 5984 84 + 1 AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAACGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGUAGCAAACGAUCAACAGU ....((((((.....(....).....))))))((((....))))........---------.....(.((((((........)))))).)... ( -23.50) >DroEre_CAF1 12440 84 + 1 AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAGCGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGUAGCGAAUGAUCAACAGU ....((((((.....(....).....))))))((((....))))........---------.....(.((((((........)))))).)... ( -21.00) >DroYak_CAF1 6608 84 + 1 AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAGCGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGCAGCGAACGAUCAAGAGU .(((((((((.....(....).....)))))(((((....))).))......---------.......((((((........)))))).)))) ( -25.60) >DroAna_CAF1 31645 84 + 1 AACUCGGCCACUAUGCAAAUAUUUUCUGGGAGCAGCGGAAGUUGGGUAGCAA---------AAAGUGCUGAUCGCAGCCAGGGGAUCAGCCAC .....(((...(((....)))((..((((..(((((....)))(..(((((.---------....)))))..)))..))))..))...))).. ( -24.30) >consensus AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAACGGAAGUUGGCAAGAAA_________AAAACGCUGAUCGGUAGCAAACGAUCAACAGU ....((((((.....(....).....))))))((((....))))....................((..((((((........))))))...)) (-18.99 = -18.68 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:43 2006