Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,816,562 – 12,816,675 |
Length | 113 |
Max. P | 0.597861 |
Location | 12,816,562 – 12,816,675 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -27.75 |
Consensus MFE | -18.44 |
Energy contribution | -19.50 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.87 |
Structure conservation index | 0.66 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12816562 113 + 22407834 -------GUUCCAUUAUUAUUCCUUGACUCAGUUUUAAGCUUCUGAGGGUAUUCCAUAUGCCUCGUUCACGGACAUGAUUUUGGCCUCCCCCGAUUAGCCAUAUCGAUUCAAGCCACACU -------...(((..((((((((.((((((((..........)))))(((((.....)))))....))).))).)))))..))).......((((.......)))).............. ( -23.40) >DroSec_CAF1 82501 113 + 1 -------GUGUCAUUAUUAUGUCUUGGCUCAGUUUUAAGCUCCUUAGGGCAUUCCAUAUGCCCCGUUCACGGACAUGAUUUUGGCCUCCCCCGAUUAGCCAUAUCGAUUCAAGCCACACU -------((((....(((((((((.((((........)))).....((((((.....)))))).......)))))))))...(((......((((.......))))......))))))). ( -29.30) >DroSim_CAF1 85821 113 + 1 -------GUGCCAUUAUUAUGCCUUCGCUCAGUUUUAAGCUCCUUAGGGCAUUCCAUAUGCCCCGUUCACGGACAUGAUUUUGGCCUCCCCCGAUUAGCCAUAUCGAUUCAAGCCACACU -------..((((..((((((((...(((........)))......((((((.....)))))).......)).))))))..))))......((((.......)))).............. ( -28.40) >DroYak_CAF1 86342 120 + 1 UUUCUAUGCCCCAUUGUUAUACCUUGGCUCAGUGGUAAGCUCCAAGGGGUAUUCCAUAUGCCCCAUUCACGGGCAUGAUUUUUGCCUCCCCCGAUUAGCCAUAUCGAUUCAAGCCACACU ......((..(((..(.....)..)))..))(((((.........((((((.....(((((((.......))))))).....))))))...((((.......))))......)))))... ( -29.90) >consensus _______GUGCCAUUAUUAUGCCUUGGCUCAGUUUUAAGCUCCUUAGGGCAUUCCAUAUGCCCCGUUCACGGACAUGAUUUUGGCCUCCCCCGAUUAGCCAUAUCGAUUCAAGCCACACU .........((((..(((((((((..(((........)))......((((((.....)))))).......)))))))))..))))......((((.......)))).............. (-18.44 = -19.50 + 1.06)
Location | 12,816,562 – 12,816,675 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -26.61 |
Energy contribution | -26.67 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.13 |
Mean z-score | -1.40 |
Structure conservation index | 0.83 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12816562 113 - 22407834 AGUGUGGCUUGAAUCGAUAUGGCUAAUCGGGGGAGGCCAAAAUCAUGUCCGUGAACGAGGCAUAUGGAAUACCCUCAGAAGCUUAAAACUGAGUCAAGGAAUAAUAAUGGAAC------- ..(((..(((((.(((....((((..((((((((..(((.....(((((((....)).))))).)))..).))))).))))))......))).)))))..)))..........------- ( -28.60) >DroSec_CAF1 82501 113 - 1 AGUGUGGCUUGAAUCGAUAUGGCUAAUCGGGGGAGGCCAAAAUCAUGUCCGUGAACGGGGCAUAUGGAAUGCCCUAAGGAGCUUAAAACUGAGCCAAGACAUAAUAAUGACAC------- .(((((((((...(((((.......)))))...)))))......(((((((....))((((((.....))))))....(.(((((....))))))..))))).......))))------- ( -32.80) >DroSim_CAF1 85821 113 - 1 AGUGUGGCUUGAAUCGAUAUGGCUAAUCGGGGGAGGCCAAAAUCAUGUCCGUGAACGGGGCAUAUGGAAUGCCCUAAGGAGCUUAAAACUGAGCGAAGGCAUAAUAAUGGCAC------- .(((((((((...(((((.......)))))...)))))......(((((((....))((((((.....))))))......(((((....)))))...))))).......))))------- ( -33.20) >DroYak_CAF1 86342 120 - 1 AGUGUGGCUUGAAUCGAUAUGGCUAAUCGGGGGAGGCAAAAAUCAUGCCCGUGAAUGGGGCAUAUGGAAUACCCCUUGGAGCUUACCACUGAGCCAAGGUAUAACAAUGGGGCAUAGAAA ..((((.(((...((.(((((.((..(((.(((.((......))...))).)))...)).))))).)).((..((((((..(........)..))))))..)).....))).)))).... ( -33.40) >consensus AGUGUGGCUUGAAUCGAUAUGGCUAAUCGGGGGAGGCCAAAAUCAUGUCCGUGAACGGGGCAUAUGGAAUACCCUAAGGAGCUUAAAACUGAGCCAAGGCAUAAUAAUGGCAC_______ ..((((.((((..(((....((((....((((.(..(((.....(((((((....)).))))).)))..).))))....))))......)))..)))).))))................. (-26.61 = -26.67 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:41 2006