Locus 4472

Sequence ID 2L_DroMel_CAF1
Location 12,813,640 – 12,813,758
Length 118
Max. P 0.946033
window7034

overview

Window 4

Location 12,813,640 – 12,813,758
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.16
Mean single sequence MFE -26.12
Consensus MFE -14.52
Energy contribution -15.52
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.07
Structure conservation index 0.56
SVM decision value 1.36
SVM RNA-class probability 0.946033
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12813640 118 + 22407834
AAGCUAAAUAAAAAGUGAAAAAGA--GACAUGCACAUGUACGUGCAUAUGUGUGUGUGUGUGUGUAUUCAGCCAAAAACCAGAGCAUCAAGUAAUUUGGUUUAUGGAUUUGGCCAUUUCU
..(((((((...............--((.(((((((..((((..((....))..))))..)))))))))..(((.((((((((((.....))..)))))))).))))))))))....... ( -37.00)
>DroSec_CAF1 79604 95 + 1
AAGCUAAAUAAAAAGUGAAAAAGA--GACAUGCACAUGUACGU--------------------GUAUUCAGCCAAAAACCAGAGCAUCAAGUAAUUUGGUUUAUGGAUUUGGCCAUU---
..(((((((...............--((.((((((......))--------------------))))))..(((.((((((((((.....))..)))))))).))))))))))....--- ( -23.70)
>DroSim_CAF1 82901 98 + 1
AAGCUAAAUAAAAAGUGAAAAAGA--GACAUGCACAUGUACGU--------------------GUAUUCAGCCAAAAACCAGAGCAUCAAGUAAUUUGGUUUAUGGAUUUGGCCAUUUCU
..(((((((...............--((.((((((......))--------------------))))))..(((.((((((((((.....))..)))))))).))))))))))....... ( -23.70)
>DroYak_CAF1 83381 99 + 1
AAGCUAAAUAAAAAGUGAAAAAAAAACACAUGCACAUGUACGAGCAU------------GUGUGUAUUCAGCCAAAAUGCAGAGCAUCAAGUAAUUUGGUUUAUGGAUUUG---------
..............(((.........)))((((((((((....))))------------))))))(((((((((((.(((..........))).))))))...)))))...--------- ( -20.10)
>consensus
AAGCUAAAUAAAAAGUGAAAAAGA__GACAUGCACAUGUACGU____________________GUAUUCAGCCAAAAACCAGAGCAUCAAGUAAUUUGGUUUAUGGAUUUGGCCAUU___
..(((((((..................((((....))))................................(((.((((((((((.....))..)))))))).))))))))))....... (-14.52 = -15.52 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:37 2006