Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,812,755 – 12,812,875 |
Length | 120 |
Max. P | 0.792347 |
Location | 12,812,755 – 12,812,875 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.39 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -22.18 |
Energy contribution | -23.42 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.73 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12812755 120 - 22407834 AAUAACAAGGCCGCAAUGUUUUCGAGUAAAGGCCAUGGGCAUAUAAAGAUCCUUGUCUGCAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGACGAACUCAUUAAA ..............((((..((((.(((((((...((((....(((((((((..(..(((.((((....)))))))..)...)))))))))..)))))))))))...))))..))))... ( -32.50) >DroSec_CAF1 78727 109 - 1 AAUA-----------AUGUUUUCAAGUGAAGGCUAUGGGCAUAUAAAGAUCCUUGUCUACAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGCCGAACUCAUUAAA ..((-----------(((..(((..(((((((...((((....(((((((((.........((((....))))((.....)))))))))))..)))))))))))....)))..))))).. ( -28.70) >DroSim_CAF1 82038 109 - 1 AAUA-----------AUGUUUUCGAUUGAAGGCUAUGGGCAUAUAAAGAUCCUUGUCUACAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGCCGAACUCAUUAAA ..((-----------(((..((((..((((((...((((....(((((((((.........((((....))))((.....)))))))))))..))))))))))....))))..))))).. ( -28.20) >DroEre_CAF1 82068 120 - 1 AAUAACAAGGCCACAAUGUUUUCGAGGAAAGGCUAUGGACAUAUAAAGAUCCUUGUCUAUAUGAGGUCCUUCAGCAUCCUGGGGAUUUUUCCACCCACCUUUACAGUCGAACUCAUUAAA ..............((((..((((((((...(((..((((.((((.((((....)))).))))..))))...))).))).(((((....))).))...........)))))..))))... ( -28.10) >DroYak_CAF1 82475 120 - 1 AAUAACAAGGCCGCAAUGUUUUCGAUUGAGGGCUAUGGGCAUAUAAAGAUCCUUGUCUAUAUGAGGUCCUUCAGCAUCGCGGGGAUUUUUCCACCCACCUUUACAGUCGAACUCAUUAAA ..............((((..((((((((((((...((((.....((((((((((((.....((((....)))).....))))))))))))...))))))))..))))))))..))))... ( -34.50) >consensus AAUAACAAGGCC_CAAUGUUUUCGAGUGAAGGCUAUGGGCAUAUAAAGAUCCUUGUCUACAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGCCGAACUCAUUAAA ..............((((..((((.(((((((...((((....(((((((((..(......((((....))))......)..)))))))))..)))))))))))...))))..))))... (-22.18 = -23.42 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:36 2006