Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,324,419 – 1,324,533 |
Length | 114 |
Max. P | 0.962923 |
Location | 1,324,419 – 1,324,533 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -26.29 |
Consensus MFE | -17.28 |
Energy contribution | -17.06 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.35 |
Structure conservation index | 0.66 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1324419 114 - 22407834 GCCACAUUUCUGGCAUCACUAUUAGGGAGGGGGUGAGUCUAAAGGUAUACAUCAAUUCUUUCUUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGCU-- ((((((.....(....)((((((((((..(((((..((((((((((.(((.................)))))))))))))...)))))....))))))))))...))))))...-- ( -28.13) >DroSec_CAF1 81829 87 - 1 GCCACAUUUCUUGCAU----------------------CUAAAGGUAUGCAUCAGUUC----UUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGC--- ((((((....(..(((----------------------((((((((.(((........----.....))))))))))))))..).....(((((.....))))).))))))..--- ( -25.92) >DroSim_CAF1 85323 90 - 1 GCCACAUUUCCUGCAU----------------------CUAAAGGUAUGCAUCAGUUC----UUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGCUCC ((((((...((.((((----------------------((((((((.(((........----.....))))))))))))))).........((....))))....))))))..... ( -24.82) >consensus GCCACAUUUCUUGCAU______________________CUAAAGGUAUGCAUCAGUUC____UUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGCU__ ((((((................................((((((((.(((.................)))))))))))...........(((((.....))))).))))))..... (-17.28 = -17.06 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:27 2006