Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,810,518 – 12,810,628 |
Length | 110 |
Max. P | 0.704707 |
Location | 12,810,518 – 12,810,628 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.97 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -22.50 |
Energy contribution | -22.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.97 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704707 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12810518 110 - 22407834 UAUAUUCAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUAUUUUUAGUAUAGAACUAUGAUUAAAUU ..((.((((((((.((((.(..((..(((....)))))..).))))(((((((((((.........)))))))))))))))).....((((.....))))))).)).... ( -24.50) >DroSec_CAF1 76267 110 - 1 UAUAUUAAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUACUUUUAUUACCGAACUAUGAUUAAAUU ........(((((.((((.(..((..(((....)))))..).))))(((((((((((.........))))))))))))))))............................ ( -22.50) >DroSim_CAF1 79512 110 - 1 UAUAUUAAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUACUUUUAUUACAGAACUAUGAUUAAAUU ........(((((.((((.(..((..(((....)))))..).))))(((((((((((.........))))))))))))))))............................ ( -22.50) >consensus UAUAUUAAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUACUUUUAUUACAGAACUAUGAUUAAAUU ........(((((.((((.(..((..(((....)))))..).))))(((((((((((.........))))))))))))))))............................ (-22.50 = -22.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:32 2006