Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,808,934 – 12,809,053 |
Length | 119 |
Max. P | 0.922117 |
Location | 12,808,934 – 12,809,053 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -31.16 |
Consensus MFE | -21.88 |
Energy contribution | -21.84 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.70 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12808934 119 + 22407834 AGUUUGUCAAGGUUCGGGAGAUGGCAUGACAAGAUAUAAAGUCCAUAUCAUGGACAUGCAAUCCCACGGGAAAAGAGUUACGGAAGCGGAAAGAGGCCGCAAAAUGGUUCGGAGUCAAA- ..........(..((((((....(((((.((.(((((.......))))).))..)))))..)))).........(((..(.....((((.......))))....)..))).))..)...- ( -29.00) >DroSec_CAF1 74677 112 + 1 AGUUUGUCAAGGUUCGGGAGAUGGCAUGACAAGAUAUAAAGUCCAUAUCAUGGACAUGCAAUCCCACGGGAAAAGAGUUACGGAAGCGGAAAGAGGCCGC-------UUCGGAAGGAAA- ............(((((((....(((((.((.(((((.......))))).))..)))))..))))...............(.(((((((.......))))-------))).)...))).- ( -32.30) >DroSim_CAF1 77925 113 + 1 AGUUUGUCAAGGUUCGGGAGAUGGCAUGACAAGAUAUAAAGUCCAUAUCAUGGACAUGCAAUCCCACGGGAAAAGAGUUACGGAAGCGGAAAGAGGCCGC-------UUCGGAAGGAAAA ............(((((((....(((((.((.(((((.......))))).))..)))))..))))...............(.(((((((.......))))-------))).)...))).. ( -32.30) >DroEre_CAF1 78051 118 + 1 AGUUUGUCAGGGCUCG-AAGAUGGCAUGACUAGAUAUAAAGUCCAUAUCAUGGACAUGCAAUCCCACGGGAAAAGAGUUACGGAAGCGGAAAGAGGGCGCAAAAUGGCUGGGUAAUGAA- .....((((.(((((.-......(((((.((((((((.......))))).))).)))))..(((....)))...)))))......(((.........)))....))))...........- ( -26.30) >DroYak_CAF1 78247 119 + 1 AGUUUGUCAGGGCUCGGGAGAUGGCAUGACAAGAUAUAAAGUCCAUAUCAUGGACAUGCAAUCCCACGGGAAAAGAGUUACGGAAGCGGAAAGCGGCAGCAAAAUGCUUUGGUAAUGAA- ......((....((((((.(((.(((((.((.(((((.......))))).))..))))).))))).))))....))(((((.((((((....((....))....)))))).)))))...- ( -35.90) >consensus AGUUUGUCAAGGUUCGGGAGAUGGCAUGACAAGAUAUAAAGUCCAUAUCAUGGACAUGCAAUCCCACGGGAAAAGAGUUACGGAAGCGGAAAGAGGCCGCAAAAUG_UUCGGAAAGAAA_ ..(((((((.(.(((....)).).).))))))).......((((((...))))))..((..(((....))).........((....))..........)).................... (-21.88 = -21.84 + -0.04)
Location | 12,808,934 – 12,809,053 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -20.84 |
Energy contribution | -21.08 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.85 |
Structure conservation index | 0.82 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12808934 119 - 22407834 -UUUGACUCCGAACCAUUUUGCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCUCCCGAACCUUGACAAACU -((((...............((((.......)))).................((.(((((.(((((..((.((((((.....)))))).)).))))).))))).))........)))).. ( -24.40) >DroSec_CAF1 74677 112 - 1 -UUUCCUUCCGAA-------GCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCUCCCGAACCUUGACAAACU -.........(((-------((((.......)))))))..............((.(((((.(((((..((.((((((.....)))))).)).))))).))))).)).............. ( -28.80) >DroSim_CAF1 77925 113 - 1 UUUUCCUUCCGAA-------GCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCUCCCGAACCUUGACAAACU ..........(((-------((((.......)))))))..............((.(((((.(((((..((.((((((.....)))))).)).))))).))))).)).............. ( -28.80) >DroEre_CAF1 78051 118 - 1 -UUCAUUACCCAGCCAUUUUGCGCCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUAGUCAUGCCAUCUU-CGAGCCCUGACAAACU -................((((((..(((...((((..................))))(((.(((((.(...((((((.....))))))..).))))).)))..-.)))...)).)))).. ( -19.07) >DroYak_CAF1 78247 119 - 1 -UUCAUUACCAAAGCAUUUUGCUGCCGCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCUCCCGAGCCCUGACAAACU -.(((((((..((((.....((....)).....))))..)))).........((.(((((.(((((..((.((((((.....)))))).)).))))).))))).)).....)))...... ( -25.60) >consensus _UUUACUUCCGAA_CAUUUUGCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCUCCCGAACCUUGACAAACU ....................((((.......)))).................((.(((((.(((((.(...((((((.....))))))..).))))).))))).)).............. (-20.84 = -21.08 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:31 2006